View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15836_low_3 (Length: 427)
Name: NF15836_low_3
Description: NF15836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15836_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 83 - 411
Target Start/End: Original strand, 49039740 - 49040068
Alignment:
| Q |
83 |
tccaattgtattttccgaatgggaggagctgccgtacttctctccaataaatcctttgataggacccaatccaagtacaagttacttcatagcgttcgaa |
182 |
Q |
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| T |
49039740 |
tccaattgtattttccgaatgggaggagctgccgtacttctctccaataaatcctttgataggacccaatccaagtacaagttacttcatagcgttcgaa |
49039839 |
T |
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| Q |
183 |
ctcatttaggagccaatgacaagagctacaattgtgtgttccaaaaagaggacgaaacagggtacacaggtgtgtctctatcgaaggagctaatgaaagt |
282 |
Q |
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| T |
49039840 |
ctcattcaggagccaatgacaagagctacaattgtgtgttccaaaaagaggacgaaacagggtacacaggtgtgtctctatcgaaggagctaatgaaagt |
49039939 |
T |
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| Q |
283 |
ggcaggagaagccttgaaaaataacataactgagttaggtccattggttttgccattttcggagcaattaatgtttatgatatcgttgtttagaaagaag |
382 |
Q |
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| T |
49039940 |
ggcaggagaagccttgaaaaataacataactgagttaggtccattggttttgccattttcggagcaattaatgtttatgatatcgttgtttagaaagaag |
49040039 |
T |
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| Q |
383 |
tcatcaaattatgtaccgaatttcaaatt |
411 |
Q |
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| T |
49040040 |
tcatcaaactatgtaccgaatttcaaatt |
49040068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 244
Target Start/End: Complemental strand, 49041694 - 49041531
Alignment:
| Q |
81 |
tttccaattgtattttccgaatgggaggagctgccgtacttctctccaataaatcctttgataggacccaatccaagtacaagttacttcatagcgttcg |
180 |
Q |
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| T |
49041694 |
tttctaattgcattttccgaatgggtggcgccgccatacttctttccaataagtcctctgatcgaacccgttccaaatacaagcttgttcatacagttcg |
49041595 |
T |
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| Q |
181 |
aactcatttaggagccaatgacaagagctacaattgtgtgttccaaaaagaggacgaaacaggg |
244 |
Q |
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| T |
49041594 |
aacccataaaggagctgatgacaagaactataactgtgtttaccagaaagaagatgagacaggg |
49041531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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