View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15836_low_4 (Length: 421)

Name: NF15836_low_4
Description: NF15836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15836_low_4
NF15836_low_4
[»] chr7 (20 HSPs)
chr7 (18-176)||(28694884-28695042)
chr7 (18-176)||(1576049-1576206)
chr7 (18-176)||(27392787-27392947)
chr7 (18-176)||(36482396-36482553)
chr7 (270-382)||(28694676-28694789)
chr7 (270-379)||(27392582-27392692)
chr7 (42-176)||(40305654-40305787)
chr7 (282-379)||(1575834-1575932)
chr7 (107-176)||(323445-323514)
chr7 (102-175)||(10286604-10286677)
chr7 (71-119)||(323379-323427)
chr7 (292-379)||(323632-323720)
chr7 (292-379)||(36482652-36482740)
chr7 (71-119)||(10286690-10286738)
chr7 (69-156)||(23246310-23246397)
chr7 (310-379)||(6714256-6714326)
chr7 (69-174)||(18360818-18360924)
chr7 (39-97)||(31279956-31280014)
chr7 (327-379)||(10286405-10286458)
chr7 (270-351)||(40303674-40303755)
[»] chr8 (27 HSPs)
chr8 (18-176)||(1265311-1265468)
chr8 (18-176)||(6345501-6345659)
chr8 (18-176)||(31127004-31127161)
chr8 (18-176)||(43619783-43619939)
chr8 (18-176)||(13471070-13471227)
chr8 (18-176)||(37948688-37948845)
chr8 (18-176)||(26720901-26721058)
chr8 (270-379)||(31127256-31127366)
chr8 (270-379)||(6345296-6345406)
chr8 (270-379)||(37948940-37949050)
chr8 (282-379)||(43620056-43620154)
chr8 (282-350)||(1265126-1265194)
chr8 (282-379)||(26721175-26721273)
chr8 (102-175)||(4602794-4602867)
chr8 (102-175)||(32907105-32907178)
chr8 (292-381)||(26721295-26721385)
chr8 (292-379)||(13470855-13470943)
chr8 (292-379)||(32906894-32906982)
chr8 (71-119)||(32907191-32907239)
chr8 (69-165)||(35738184-35738280)
chr8 (292-379)||(4602587-4602675)
chr8 (71-119)||(4602880-4602928)
chr8 (69-100)||(8081632-8081663)
chr8 (70-100)||(7654936-7654966)
chr8 (307-379)||(42200110-42200183)
chr8 (292-379)||(4267336-4267424)
chr8 (68-100)||(40619372-40619404)
[»] chr1 (11 HSPs)
chr1 (18-176)||(14461907-14462064)
chr1 (18-176)||(5559589-5559747)
chr1 (26-176)||(24063651-24063799)
chr1 (270-379)||(5559384-5559494)
chr1 (292-379)||(14461707-14461795)
chr1 (89-176)||(16902770-16902857)
chr1 (281-379)||(24063930-24064029)
chr1 (281-379)||(41074894-41074993)
chr1 (307-379)||(41198549-41198622)
chr1 (69-100)||(22173159-22173190)
chr1 (32-97)||(35671870-35671935)
[»] chr4 (20 HSPs)
chr4 (18-176)||(24574901-24575057)
chr4 (18-176)||(9280131-9280287)
chr4 (18-176)||(7700487-7700646)
chr4 (52-176)||(18780705-18780829)
chr4 (282-379)||(24575174-24575272)
chr4 (282-379)||(9279916-9280014)
chr4 (34-173)||(56078633-56078772)
chr4 (102-176)||(46251799-46251873)
chr4 (273-379)||(46251931-46252038)
chr4 (102-176)||(47498706-47498780)
chr4 (281-379)||(47498856-47498955)
chr4 (283-379)||(18780947-18781044)
chr4 (307-371)||(47997031-47997096)
chr4 (71-119)||(46251738-46251786)
chr4 (71-119)||(47498645-47498693)
chr4 (293-350)||(7700302-7700359)
chr4 (292-379)||(3756954-3757042)
chr4 (292-379)||(42414576-42414664)
chr4 (289-379)||(20580583-20580674)
chr4 (32-97)||(7611957-7612022)
[»] chr3 (20 HSPs)
chr3 (18-176)||(19636289-19636448)
chr3 (18-176)||(37282391-37282547)
chr3 (18-176)||(48973483-48973642)
chr3 (102-176)||(25706468-25706542)
chr3 (39-176)||(16215371-16215508)
chr3 (282-350)||(37282664-37282732)
chr3 (18-119)||(25706555-25706657)
chr3 (102-175)||(32055707-32055780)
chr3 (34-119)||(39717004-39717089)
chr3 (102-176)||(39717103-39717177)
chr3 (26-116)||(51580445-51580534)
chr3 (282-350)||(19636565-19636633)
chr3 (292-379)||(32055898-32055986)
chr3 (48-156)||(48082650-48082757)
chr3 (70-173)||(45701216-45701318)
chr3 (71-119)||(32055646-32055694)
chr3 (68-115)||(24461898-24461945)
chr3 (69-174)||(32033836-32033941)
chr3 (307-379)||(1030452-1030525)
chr3 (307-379)||(40166829-40166902)
[»] chr2 (11 HSPs)
chr2 (18-176)||(16672219-16672375)
chr2 (282-381)||(16672001-16672102)
chr2 (102-175)||(18511747-18511820)
chr2 (71-119)||(18511833-18511881)
chr2 (42-126)||(23481748-23481831)
chr2 (18-80)||(34440188-34440250)
chr2 (327-379)||(18511548-18511601)
chr2 (39-96)||(22596608-22596665)
chr2 (67-176)||(34440060-34440172)
chr2 (32-97)||(42295580-42295645)
chr2 (292-379)||(21352337-21352425)
[»] chr6 (10 HSPs)
chr6 (18-176)||(7608026-7608182)
chr6 (18-176)||(16705108-16705267)
chr6 (282-379)||(7608299-7608397)
chr6 (26-176)||(10517370-10517518)
chr6 (270-379)||(16705362-16705465)
chr6 (18-116)||(30395828-30395927)
chr6 (102-176)||(21946876-21946950)
chr6 (71-119)||(21946963-21947011)
chr6 (293-338)||(10484409-10484454)
chr6 (307-379)||(21946701-21946774)
[»] chr5 (18 HSPs)
chr5 (18-176)||(40987546-40987702)
chr5 (20-176)||(13521683-13521838)
chr5 (18-176)||(13554974-13555132)
chr5 (282-379)||(40987331-40987429)
chr5 (18-158)||(42715889-42716031)
chr5 (270-381)||(13521480-13521592)
chr5 (292-372)||(13554766-13554847)
chr5 (32-97)||(17342246-17342311)
chr5 (292-382)||(1495915-1496006)
chr5 (26-97)||(17035304-17035374)
chr5 (278-379)||(27110646-27110748)
chr5 (145-176)||(33160684-33160715)
chr5 (39-97)||(4986398-4986456)
chr5 (39-97)||(12291138-12291196)
chr5 (294-379)||(33160509-33160595)
chr5 (32-97)||(1495656-1495721)
chr5 (69-156)||(25932384-25932471)
chr5 (69-116)||(32764979-32765027)
[»] scaffold0034 (1 HSPs)
scaffold0034 (270-379)||(47761-47871)


Alignment Details
Target: chr7 (Bit Score: 139; Significance: 1e-72; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 18 - 176
Target Start/End: Complemental strand, 28695042 - 28694884
Alignment:
Q  18 caaagtgtaacatgtaatttcttttattaatatttatattactcatacgcaataaaataataggtttgatacaaaatataacacaaatttattaaaaaag 117  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  28695042 caaagtgtaacatgtaattttttttattaatattaatattactcatacgcaataaaataataggtttgatacaaaatatgacacaaatttattaaaaaag 28694943  T
Q  118 ttaacattacacaagaaaaatgatttattatatttgaaatagatgaagtagtaataata 176  Q
    |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  28694942 ttaacattacacaataaaaatgattgattatatttgaaatagatgaagtagtaataata 28694884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 18 - 176
Target Start/End: Complemental strand, 1576206 - 1576049
Alignment:
Q  18 caaagtgtaacatgtaatttcttttattaatatttatattactcatacgcaataaaataataggtttgatacaaaatataacacaaatttattaaaaaag 117  Q
    |||||||||||||||||||| |||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  1576206 caaagtgtaacatgtaatttttttt-ttaatattaatattactcatacacaataaaataataggtttgatacaaaatatgacacaaatttattaaaaaag 1576108  T
Q  118 ttaacattacacaagaaaaatgatttattatatttgaaatagatgaagtagtaataata 176  Q
    ||||||||||||||  ||||||||| ||||||||||||||||||| |||||||||||||    
T  1576107 ttaacattacacaatgaaaatgattgattatatttgaaatagatgtagtagtaataata 1576049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 18 - 176
Target Start/End: Complemental strand, 27392947 - 27392787
Alignment:
Q  18 caaagtgtaacatgtaatttcttttatt--aatatttatattactcatacgcaataaaataataggtttgatacaaaatataacacaaatttattaaaaa 115  Q
    |||||||||||||||||||| |||| ||  |||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||     
T  27392947 caaagtgtaacatgtaatttttttttttttaatattaatattactcatacacaataaaataataggtttgatacaaaatatgacacaaatttattaaaat 27392848  T
Q  116 agttaacattacacaagaaaaatgatttattatatttgaaatagatgaagtagtaataata 176  Q
    |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  27392847 agttaacattacacaataaaaatgattgattatatttgaaatagatgaagtagtaataata 27392787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 18 - 176
Target Start/End: Original strand, 36482396 - 36482553
Alignment:
Q  18 caaagtgtaacatgtaatttcttttattaatatttatattactcatacgcaataaaataataggtttgatacaaaatataacacaaatttattaaaaaag 117  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||| ||||||    
T  36482396 caaagtgtaacatgtaattttttttattaatattaatattactcatacacaataaaataataggtttgatacaaaagatgacacaaatttatt-aaaaag 36482494  T
Q  118 ttaacattacacaagaaaaatgatttattatatttgaaatagatgaagtagtaataata 176  Q
    ||||||||||||||  ||||||||| ||||||||||||||||||||||| |||||||||    
T  36482495 ttaacattacacaatgaaaatgattgattatatttgaaatagatgaagttgtaataata 36482553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 270 - 382
Target Start/End: Complemental strand, 28694789 - 28694676
Alignment:
Q  270 atttactgttgcggttcgatttggttttgaaaacgcaatccgaaatccaatccgatcatagcggtttttccataacaacattcaagcacat-caaaaata 368  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||  |||||||    
T  28694789 atttactattgcggttcggtttggttttgaaaacgcaatccgaaatccaatccgatcatagcggtttttccataacaacatccaaacacataaaaaaata 28694690  T
Q  369 ttcggttttttaca 382  Q
    |||| |||||||||    
T  28694689 ttcgattttttaca 28694676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 270 - 379
Target Start/End: Complemental strand, 27392692 - 27392582
Alignment:
Q  270 atttactgttgcggttcgatttggttttgaaaacgcaatccgaaatccaatccgatcatagcggtttttccataacaacattcaagcacat-caaaaata 368  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||| ||| ||||| ||||||||    
T  27392692 atttacttttgcggttcggtttggttttgaaaacgcaatccgaaatccgatccgatcatagcggttttttcaaaacaacatccaaacacatccaaaaata 27392593  T
Q  369 ttcggtttttt 379  Q
    |||||||||||    
T  27392592 ttcggtttttt 27392582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 42 - 176
Target Start/End: Complemental strand, 40305787 - 40305654
Alignment:
Q  42 tattaatatttatattactcatacgcaataaaataataggtttgatacaaaatataacacaaatttattaaaaaagttaacattacacaagaaaaatgat 141  Q
    |||||||||| ||||||| ||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||  ||||| ||    
T  40305787 tattaatattaatattacacatacacaataaaataataggtttgatgcaaaatataacataaatttattaaaaaa-ttaacattacacaatgaaaataat 40305689  T
Q  142 ttattatatttgaaatagatgaagtagtaataata 176  Q
      ||||||||||||| | | |||||||||||||||    
T  40305688 cgattatatttgaaacatacgaagtagtaataata 40305654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 282 - 379
Target Start/End: Complemental strand, 1575932 - 1575834
Alignment:
Q  282 ggttcgatttggttttgaaaacgcaatccgaaatccaatccgatcatagcggtttttccataacaacattcaagcacat-caaaaatattcggtttttt 379  Q
    |||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||| ||||| ||||||||||| |||||||    
T  1575932 ggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatattcagtttttt 1575834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 107 - 176
Target Start/End: Original strand, 323445 - 323514
Alignment:
Q  107 tattaaaaaagttaacattacacaagaaaaatgatttattatatttgaaatagatgaagtagtaataata 176  Q
    |||||||||| ||||| ||||||||  ||||||||| |||||||||||||||||||||||||||||||||    
T  323445 tattaaaaaaattaactttacacaatgaaaatgattgattatatttgaaatagatgaagtagtaataata 323514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 102 - 175
Target Start/End: Complemental strand, 10286677 - 10286604
Alignment:
Q  102 aaatttattaaaaaagttaacattacacaagaaaaatgatttattatatttgaaatagatgaagtagtaataat 175  Q
    |||| |||||||||| ||||| ||||||||  ||||||||| ||||||||||||||||||||||||||||||||    
T  10286677 aaatgtattaaaaaaattaactttacacaatgaaaatgattgattatatttgaaatagatgaagtagtaataat 10286604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 323379 - 323427
Alignment:
Q  71 aaaataataggtttgatacaaaatataacacaaatttattaaaaaagtt 119  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  323379 aaaataataagtttgatacaaaatataacacaaatgtattaaaaaagtt 323427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 292 - 379
Target Start/End: Original strand, 323632 - 323720
Alignment:
Q  292 ggttttgaaaacgcaatccgaaatccaatccgatcatagcggtttttccataacaacattcaagcacat-caaaaatattcggtttttt 379  Q
    ||||||||||| |  ||||||||||| | || |||||||||||||| ||| |||||||| ||| ||||| |||||||||||||||||||    
T  323632 ggttttgaaaaggtgatccgaaatccgaaccaatcatagcggttttgccaaaacaacatccaaacacatccaaaaatattcggtttttt 323720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 292 - 379
Target Start/End: Original strand, 36482652 - 36482740
Alignment:
Q  292 ggttttgaaaacgcaatccgaaatccaatccgatcatagcggtttttccataacaacattcaagcacat-caaaaatattcggtttttt 379  Q
    |||||||||||  |||||||||| || |||||||||||| |||||||| | |||||||| ||| ||||| |||||||||||| ||||||    
T  36482652 ggttttgaaaagacaatccgaaaaccgatccgatcatagtggtttttctaaaacaacatccaaacacatccaaaaatattcgatttttt 36482740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 10286738 - 10286690
Alignment:
Q  71 aaaataataggtttgatacaaaatataacacaaatttattaaaaaagtt 119  Q
    ||||||||| |||||||||||||||||||| |||| |||||||||||||    
T  10286738 aaaataataagtttgatacaaaatataacaaaaatgtattaaaaaagtt 10286690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 156
Target Start/End: Original strand, 23246310 - 23246397
Alignment:
Q  69 ataaaataataggtttgatacaaaatataacaca-aatttattaaaaaagttaacattacacaagaaaaatgatttattatatttgaaa 156  Q
    ||||||||||||||||||||  |||||||||| |  ||||| ||||||| |||| | |||| || |||||||||||||||| |||||||    
T  23246310 ataaaataataggtttgatatgaaatataacatatgattta-taaaaaaattaatagtacaaaataaaaatgatttattatctttgaaa 23246397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 379
Target Start/End: Original strand, 6714256 - 6714326
Alignment:
Q  310 cgaaatccaatccgatcatagcggtttttccataacaacattcaagcacat-caaaaatattcggtttttt 379  Q
    |||||||| |||||||| ||||||||||| || || ||||| ||| ||||| |||| ||||||||||||||    
T  6714256 cgaaatccgatccgatcctagcggtttttacaaaataacatccaaacacatccaaatatattcggtttttt 6714326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 174
Target Start/End: Complemental strand, 18360924 - 18360818
Alignment:
Q  69 ataaaataataggtttgatacaaaatataacaca-aatttattaaaaaagttaacattacacaagaaaaatgatttattatatttgaaatagatgaagta 167  Q
    |||||||||||||||||||||  ||||||||| |  |||||| |||||| |||| | || | || |||||||||| ||||| ||||||| | ||||| ||    
T  18360924 ataaaataataggtttgatacggaatataacatatgatttataaaaaaaattaatagtataaaataaaaatgattgattatctttgaaacatatgaaata 18360825  T
Q  168 gtaataa 174  Q
    | |||||    
T  18360824 gaaataa 18360818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 97
Target Start/End: Original strand, 31279956 - 31280014
Alignment:
Q  39 ttttattaatatttatattactcatacgcaataaaataataggtttgatacaaaatata 97  Q
    ||||||||||||| ||||||| || || |  |||||||||||||||||| |||||||||    
T  31279956 ttttattaatattaatattacacaaacacggtaaaataataggtttgatgcaaaatata 31280014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 379
Target Start/End: Complemental strand, 10286458 - 10286405
Alignment:
Q  327 atagcggtttttccataacaacattcaagcacat-caaaaatattcggtttttt 379  Q
    ||||||||||| ||| |||||||| ||| ||||| |||||||||||||||||||    
T  10286458 atagcggttttgccaaaacaacatccaaacacatccaaaaatattcggtttttt 10286405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 351
Target Start/End: Complemental strand, 40303755 - 40303674
Alignment:
Q  270 atttactgttgcggttcgatttggttttgaaaacgcaatccgaaatccaatccgatcatagcggtttttccataacaacatt 351  Q
    ||||||| |||||||||||||  ||||||||||    ||| |||||||||||| ||| ||| ||||||| || |||||||||    
T  40303755 atttacttttgcggttcgattcagttttgaaaaaatgatctgaaatccaatccaatcttagtggtttttacaaaacaacatt 40303674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 123; Significance: 5e-63; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 18 - 176
Target Start/End: Complemental strand, 1265468 - 1265311
Alignment:
Q  18 caaagtgtaacatgtaatttcttttattaatatttatattactcatacgcaataaaataataggtttgatacaaaatataacacaaatttattaaaaaag 117  Q
    |||||||||||||||||||| |||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  1265468 caaagtgtaacatgtaatttttttt-ttaatattaatattactcatacacaataaaataataggtttgatacaaaatatgacacaaatttattaaaaaag 1265370  T
Q  118 ttaacattacacaagaaaaatgatttattatatttgaaatagatgaagtagtaataata 176  Q
    ||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||    
T  1265369 ttaacattacacaatgaaaatgattgattatatttgaaatagatgaagtagtaataata 1265311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 18 - 176
Target Start/End: Complemental strand, 6345659 - 6345501
Alignment:
Q  18 caaagtgtaacatgtaatttcttttattaatatttatattactcatacgcaataaaataataggtttgatacaaaatataacacaaatttattaaaaaag 117  Q
    |||||||||||||||||||| |||| | |||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  6345659 caaagtgtaacatgtaattttttttttaaatattaatattactcatacacaataaaataataggtttgatacaaaatatgacacaaatttatttaaaaag 6345560  T
Q  118 ttaacattacacaagaaaaatgatttattatatttgaaatagatgaagtagtaataata 176  Q
    |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  6345559 ttaacattacacaataaaaatgattgattatatttgaaatagatgaagtagtaataata 6345501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 18 - 176
Target Start/End: Original strand, 31127004 - 31127161
Alignment:
Q  18 caaagtgtaacatgtaatttcttttattaatatttatattactcatacgcaataaaataataggtttgatacaaaatataacacaaatttattaaaaaag 117  Q
    |||||||||||||||||||| |||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  31127004 caaagtgtaacatgtaatttttttt-ttaatattaatattactcatacacaataaaataataggtttgatacaaaatatgacacaaatttattaaaaaag 31127102  T
Q  118 ttaacattacacaagaaaaatgatttattatatttgaaatagatgaagtagtaataata 176  Q
    ||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||    
T  31127103 ttaacattacacaatgaaaatgattgattatatttgaaatagatgaagtagtaataata 31127161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 18 - 176
Target Start/End: Original strand, 43619783 - 43619939
Alignment:
Q  18 caaagtgtaacatgtaatttcttttattaatatttatattactcatacgcaataaaataataggtttgatacaaaatataacacaaatttattaaaaaag 117  Q
    |||||||||||||||||||| ||||  ||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  43619783 caaagtgtaacatgtaatttttttt--taatattaatattactcatacacaataaaataataggtttgatacaaaatatgacacaaatttattaaaaaag 43619880  T
Q  118 ttaacattacacaagaaaaatgatttattatatttgaaatagatgaagtagtaataata 176  Q
    ||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||    
T  43619881 ttaacattacacaatgaaaatgattgattatatttgaaatagatgaagtagtaataata 43619939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 18 - 176
Target Start/End: Complemental strand, 13471227 - 13471070
Alignment:
Q  18 caaagtgtaacatgtaatttcttttattaatatttatattactcatacgcaataaaataataggtttgatacaaaatataacacaaatttattaaaaaag 117  Q
    |||||||||||||||||| | ||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  13471227 caaagtgtaacatgtaatat-ttttattaatattaatattactcgtacacaataaaataataggtttgatacaaaatatgacacaaatttattaaaaaag 13471129  T
Q  118 ttaacattacacaagaaaaatgatttattatatttgaaatagatgaagtagtaataata 176  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||    
T  13471128 ttaacattacacaataaaaatgattgattatatttgaaatagatgaagttgtaataata 13471070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 18 - 176
Target Start/End: Original strand, 37948688 - 37948845
Alignment:
Q  18 caaagtgtaacatgtaatttcttttattaatatttatattactcatacgcaataaaataataggtttgatacaaaatataacacaaatttattaaaaaag 117  Q
    |||||||||||||||||||| |||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  37948688 caaagtgtaacatgtaatttttttt-ttaatattaatattactcatacacaataaaataataggtttgatacaaaatatgacacaaatttatttaaaaag 37948786  T
Q  118 ttaacattacacaagaaaaatgatttattatatttgaaatagatgaagtagtaataata 176  Q
    |||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||    
T  37948787 ttaacattacacgataaaaatgattgattatatttgaaatagatgaagtagtaataata 37948845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 18 - 176
Target Start/End: Original strand, 26720901 - 26721058
Alignment:
Q  18 caaagtgtaacatgtaatttcttttattaatatttatattactcatacgcaataaaataataggtttgatacaaaatataacacaaatttattaaaaaag 117  Q
    |||||||||||||||||||| |||||||| |||| ||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  26720901 caaagtgtaacatgtaattttttttatta-tattaatattactcatacacaataaaataataggtttgatacaaagtatgacacaaatttattaaaaaag 26720999  T
Q  118 ttaacattacacaagaaaaatgatttattatatttgaaatagatgaagtagtaataata 176  Q
    ||||||||||||||  ||||| ||  |||||||||||||||||||||||||||||||||    
T  26721000 ttaacattacacaatgaaaataatcgattatatttgaaatagatgaagtagtaataata 26721058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 270 - 379
Target Start/End: Original strand, 31127256 - 31127366
Alignment:
Q  270 atttactgttgcggttcgatttggttttgaaaacgcaatccgaaatccaatccgatcatagcggtttttccataacaacattcaagcacat-caaaaata 368  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||| ||||| ||||||||    
T  31127256 atttacttttgcggttcggtttggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaata 31127355  T
Q  369 ttcggtttttt 379  Q
    |||||||||||    
T  31127356 ttcggtttttt 31127366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 270 - 379
Target Start/End: Complemental strand, 6345406 - 6345296
Alignment:
Q  270 atttactgttgcggttcgatttggttttgaaaacgcaatccgaaatccaatccgatcatagcggtttttccataacaacattcaagcacat-caaaaata 368  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||| ||||| ||||||||    
T  6345406 atttacttttgcggttcggtttggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaata 6345307  T
Q  369 ttcggtttttt 379  Q
    || ||||||||    
T  6345306 tttggtttttt 6345296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 270 - 379
Target Start/End: Original strand, 37948940 - 37949050
Alignment:
Q  270 atttactgttgcggttcgatttggttttgaaaacgcaatccgaaatccaatccgatcatagcggtttttccataacaacattcaagcacat-caaaaata 368  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||| ||||| ||||||||    
T  37948940 atttacttttgcggttcggtttggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaata 37949039  T
Q  369 ttcggtttttt 379  Q
    || ||||||||    
T  37949040 tttggtttttt 37949050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 282 - 379
Target Start/End: Original strand, 43620056 - 43620154
Alignment:
Q  282 ggttcgatttggttttgaaaacgcaatccgaaatccaatccgatcatagcggtttttccataacaacattcaagcacat-caaaaatattcggtttttt 379  Q
    |||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||| ||| ||||| |||||||||||||||||||    
T  43620056 ggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaagcaacatccaaacacatccaaaaatattcggtttttt 43620154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 282 - 350
Target Start/End: Complemental strand, 1265194 - 1265126
Alignment:
Q  282 ggttcgatttggttttgaaaacgcaatccgaaatccaatccgatcatagcggtttttccataacaacat 350  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  1265194 ggttcggtttggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacat 1265126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 282 - 379
Target Start/End: Original strand, 26721175 - 26721273
Alignment:
Q  282 ggttcgatttggttttgaaaacgcaatccgaaatccaatccgatcatagcggtttttccataacaacattcaagcacat-caaaaatattcggtttttt 379  Q
    |||||| || ||||||||||||||||||| ||||   ||||||||||||||||||||||| |||||||| ||| ||||| |||||||||||||||||||    
T  26721175 ggttcggttcggttttgaaaacgcaatccaaaataagatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatattcggtttttt 26721273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 102 - 175
Target Start/End: Complemental strand, 4602867 - 4602794
Alignment:
Q  102 aaatttattaaaaaagttaacattacacaagaaaaatgatttattatatttgaaatagatgaagtagtaataat 175  Q
    |||| |||||||||| ||||| ||||||||  ||||||||| ||||||||||||||||||||||||||||||||    
T  4602867 aaatgtattaaaaaaattaactttacacaatgaaaatgattgattatatttgaaatagatgaagtagtaataat 4602794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 102 - 175
Target Start/End: Complemental strand, 32907178 - 32907105
Alignment:
Q  102 aaatttattaaaaaagttaacattacacaagaaaaatgatttattatatttgaaatagatgaagtagtaataat 175  Q
    |||| |||||||||| ||||| ||||||||  ||||||||| ||||||||||||||||||||||||||||||||    
T  32907178 aaatgtattaaaaaaattaactttacacaatgaaaatgattgattatatttgaaatagatgaagtagtaataat 32907105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 292 - 381
Target Start/End: Original strand, 26721295 - 26721385
Alignment:
Q  292 ggttttgaaaacgcaatccgaaatccaatccgatcatagcggtttttccataacaacattcaagcacat-caaaaatattcggttttttac 381  Q
    |||||||||||||||||||||||||  ||  ||||||||||||||||||| |||||| | ||| ||||| |||||||||||| ||||||||    
T  26721295 ggttttgaaaacgcaatccgaaatctgatttgatcatagcggtttttccaaaacaacgtccaaacacatccaaaaatattcgattttttac 26721385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 292 - 379
Target Start/End: Complemental strand, 13470943 - 13470855
Alignment:
Q  292 ggttttgaaaacgcaatccgaaatccaatccgatcatagcggtttttccataacaacattcaagcacat-caaaaatattcggtttttt 379  Q
    ||||||||||| |||| |||||| || |||||||| ||||| |||||||| |||||||| ||| ||||| |||||||||||||||||||    
T  13470943 ggttttgaaaaggcaaaccgaaaaccgatccgatcgtagcgttttttccaaaacaacatccaaacacatccaaaaatattcggtttttt 13470855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 292 - 379
Target Start/End: Complemental strand, 32906982 - 32906894
Alignment:
Q  292 ggttttgaaaacgcaatccgaaatccaatccgatcatagcggtttttccataacaacattcaagcacat-caaaaatattcggtttttt 379  Q
    ||||||||||| |  ||||||||||| | || |||||||||||||| ||| |||||||| ||| ||||| |||||||||||||||||||    
T  32906982 ggttttgaaaatgtgatccgaaatccgaaccaatcatagcggttttgccaaaacaacatccaaacacatccaaaaatattcggtttttt 32906894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 32907239 - 32907191
Alignment:
Q  71 aaaataataggtttgatacaaaatataacacaaatttattaaaaaagtt 119  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  32907239 aaaataataagtttgatacaaaatataacacaaatgtattaaaaaagtt 32907191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 165
Target Start/End: Original strand, 35738184 - 35738280
Alignment:
Q  69 ataaaataataggtttgatacaaaatataacaca-aatttattaaaaaagttaacattacacaagaaaaatgatttattatatttgaaatagatgaag 165  Q
    |||||||||||||||||||||| |||||||| ||  ||||||||||||| |||| |||||| || ||||||| || ||||| ||||||| | ||||||    
T  35738184 ataaaataataggtttgatacagaatataactcatgatttattaaaaaa-ttaatattacaaaataaaaatggttgattatctttgaaacatatgaag 35738280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 292 - 379
Target Start/End: Complemental strand, 4602675 - 4602587
Alignment:
Q  292 ggttttgaaaacgcaatccgaaatccaatccgatcatagcggtttttccataacaacattcaagcacat-caaaaatattcggtttttt 379  Q
    ||||||||||| |  ||||||||||| | || |||||||||||||| ||| |||||||| ||| ||| | |||||||||||||||||||    
T  4602675 ggttttgaaaatgtgatccgaaatccgaaccaatcatagcggttttgccaaaacaacatccaaacacgtccaaaaatattcggtttttt 4602587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 4602928 - 4602880
Alignment:
Q  71 aaaataataggtttgatacaaaatataacacaaatttattaaaaaagtt 119  Q
    ||||||||| |||||||||| |||||||||||||| |||||||||||||    
T  4602928 aaaataataagtttgatacagaatataacacaaatgtattaaaaaagtt 4602880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 69 - 100
Target Start/End: Complemental strand, 8081663 - 8081632
Alignment:
Q  69 ataaaataataggtttgatacaaaatataaca 100  Q
    ||||||||||||||||||||||||||||||||    
T  8081663 ataaaataataggtttgatacaaaatataaca 8081632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 100
Target Start/End: Original strand, 7654936 - 7654966
Alignment:
Q  70 taaaataataggtttgatacaaaatataaca 100  Q
    |||||||||||||||||||||||||||||||    
T  7654936 taaaataataggtttgatacaaaatataaca 7654966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 379
Target Start/End: Original strand, 42200110 - 42200183
Alignment:
Q  307 atccgaaatccaatccgatcatagcggtttttccataacaacattcaagcacatc-aaaaatattcggtttttt 379  Q
    ||||||||| | ||||||||||| ||||||||  | |||||||| ||| |||||| ||||||||||||| ||||    
T  42200110 atccgaaattcgatccgatcataacggtttttataaaacaacatccaaacacatctaaaaatattcggtctttt 42200183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 292 - 379
Target Start/End: Complemental strand, 4267424 - 4267336
Alignment:
Q  292 ggttttgaaaacgcaatccgaaatccaatccgatcatagcggtttttccataacaacattcaagcacat-caaaaatattcggtttttt 379  Q
    ||||||||||| |  |||| |||||| |||||||| ||||||||||| || || ||||| ||| | ||| |||| ||||||||||||||    
T  4267424 ggttttgaaaaggtgatccaaaatccgatccgatcttagcggtttttacaaaataacatccaaacgcatccaaatatattcggtttttt 4267336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 100
Target Start/End: Original strand, 40619372 - 40619404
Alignment:
Q  68 aataaaataataggtttgatacaaaatataaca 100  Q
    ||||||||||||| |||||||||||||||||||    
T  40619372 aataaaataatagatttgatacaaaatataaca 40619404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 123; Significance: 5e-63; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 18 - 176
Target Start/End: Complemental strand, 14462064 - 14461907
Alignment:
Q  18 caaagtgtaacatgtaatttcttttattaatatttatattactcatacgcaataaaataataggtttgatacaaaatataacacaaatttattaaaaaag 117  Q
    |||||||||||||||||||| |||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  14462064 caaagtgtaacatgtaatttttttt-ttaatattaatattactcatacacaataaaataataggtttgatacaaaatatgacacaaatttattaaaaaag 14461966  T
Q  118 ttaacattacacaagaaaaatgatttattatatttgaaatagatgaagtagtaataata 176  Q
    ||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||    
T  14461965 ttaacattacacaatgaaaatgattgattatatttgaaatagatgaagtagtaataata 14461907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 18 - 176
Target Start/End: Complemental strand, 5559747 - 5559589
Alignment:
Q  18 caaagtgtaacatgtaatttcttttattaatatttatattactcatacgcaataaaataataggtttgatacaaaatataacacaaatttattaaaaaag 117  Q
    |||||||||||||||||||| |||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  5559747 caaagtgtaacatgtaattttttttgttaatattaatattactcatacacaataaaataataggtttgatacaaaatatgacacaaatttatttaaaaag 5559648  T
Q  118 ttaacattacacaagaaaaatgatttattatatttgaaatagatgaagtagtaataata 176  Q
    ||||||||| ||||  ||||||||| |||||||||||||||||||||||||||||||||    
T  5559647 ttaacattatacaatgaaaatgattgattatatttgaaatagatgaagtagtaataata 5559589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 26 - 176
Target Start/End: Original strand, 24063651 - 24063799
Alignment:
Q  26 aacatgtaatttcttttattaatatttatattactcatacgcaataaaataataggtttgatacaaaatataacacaaatttattaaaaaagttaacatt 125  Q
    |||||||||||| ||||||||||||| | ||||| ||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  24063651 aacatgtaattt-ttttattaatattaacattacacatacacaataaaataataggtttgatacaaa-tataacacaaatgtattaaaaaagttaacatt 24063748  T
Q  126 acacaagaaaaatgatttattatatttgaaatagatgaagtagtaataata 176  Q
    ||||||  |||||| || ||||||||| ||||| |||||||||||||||||    
T  24063749 acacaatgaaaatggttgattatattttaaatatatgaagtagtaataata 24063799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 270 - 379
Target Start/End: Complemental strand, 5559494 - 5559384
Alignment:
Q  270 atttactgttgcggttcgatttggttttgaaaacgcaatccgaaatccaatccgatcatagcggtttttccataacaacattcaagcacat-caaaaata 368  Q
    ||||||| |||||||||| |||||||||||||| |||||||||||||  |||||||||| |||||||||||| |||||||| ||| ||||| ||||||||    
T  5559494 atttacttttgcggttcggtttggttttgaaaatgcaatccgaaatctgatccgatcatggcggtttttccaaaacaacatccaaacacatccaaaaata 5559395  T
Q  369 ttcggtttttt 379  Q
    ||| |||||||    
T  5559394 ttcagtttttt 5559384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 292 - 379
Target Start/End: Complemental strand, 14461795 - 14461707
Alignment:
Q  292 ggttttgaaaacgcaatccgaaatccaatccgatcatagcggtttttccataacaacattcaagcacat-caaaaatattcggtttttt 379  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||| ||||| ||||||||||||| |||||    
T  14461795 ggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatattcgggttttt 14461707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 89 - 176
Target Start/End: Complemental strand, 16902857 - 16902770
Alignment:
Q  89 caaaatataacacaaatttattaaaaaagttaacattacacaagaaaaatgatttattatatttgaaatagatgaagtagtaataata 176  Q
    ||||||||||||||||| |||||||||| |||||||||||||| |||||||||  ||||||||||||| | | |||||||||||||||    
T  16902857 caaaatataacacaaatgtattaaaaaaattaacattacacaataaaaatgatcgattatatttgaaacatacgaagtagtaataata 16902770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 281 - 379
Target Start/End: Original strand, 24063930 - 24064029
Alignment:
Q  281 cggttcgatttggttttgaaaacgcaatccgaaatccaatccgatcatagcggtttttccataacaacattcaagcac-atcaaaaatattcggtttttt 379  Q
    ||||| |||||||||||||||| |  ||||||||||| |||| |||||||||||||||||| |||||||| ||  ||| ||||| |||||||| ||||||    
T  24063930 cggtttgatttggttttgaaaaagtgatccgaaatccgatccaatcatagcggtttttccaaaacaacatccatacacaatcaataatattcgatttttt 24064029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 281 - 379
Target Start/End: Complemental strand, 41074993 - 41074894
Alignment:
Q  281 cggttcgatttggttttgaaaacgcaatccgaaatccaatccgatcatagcggtttttccataacaacattcaagcacat-caaaaatattcggtttttt 379  Q
    ||||||| |||||||||||| | |  ||||||||| ||||| || ||||||||||||| || |||||||| ||| ||||| |||||||||||| ||||||    
T  41074993 cggttcggtttggttttgaagaggtgatccgaaattcaatctgaccatagcggttttttcaaaacaacatccaaacacatccaaaaatattcgatttttt 41074894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 307 - 379
Target Start/End: Original strand, 41198549 - 41198622
Alignment:
Q  307 atccgaaatccaatccgatcatagcggtttttccataacaacattcaagcacat-caaaaatattcggtttttt 379  Q
    ||||||||||| |||||||| ||||||||||| || |||||||| ||| ||||| |||| ||||||||||||||    
T  41198549 atccgaaatccgatccgatcttagcggtttttacaaaacaacatccaatcacatccaaatatattcggtttttt 41198622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 69 - 100
Target Start/End: Complemental strand, 22173190 - 22173159
Alignment:
Q  69 ataaaataataggtttgatacaaaatataaca 100  Q
    ||||||||||||||||||||||||||||||||    
T  22173190 ataaaataataggtttgatacaaaatataaca 22173159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 97
Target Start/End: Original strand, 35671870 - 35671935
Alignment:
Q  32 taatttcttttattaatatttatattactcatacgcaataaaataataggtttgatacaaaatata 97  Q
    |||||| ||||||||||||| ||||||  || || || |||| ||||||||||||| |||||||||    
T  35671870 taattttttttattaatattaatattaaacaaacacattaaattaataggtttgatgcaaaatata 35671935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 120; Significance: 3e-61; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 18 - 176
Target Start/End: Original strand, 24574901 - 24575057
Alignment:
Q  18 caaagtgtaacatgtaatttcttttattaatatttatattactcatacgcaataaaataataggtttgatacaaaatataacacaaatttattaaaaaag 117  Q
    |||||||||||||||||||| ||||  ||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  24574901 caaagtgtaacatgtaatttttttt--taatattaatattactcatacacaataaaataataggtttgatacaaaatatgacacaaatttattaaaaaag 24574998  T
Q  118 ttaacattacacaagaaaaatgatttattatatttgaaatagatgaagtagtaataata 176  Q
    ||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||    
T  24574999 ttaacattacacaatgaaaatgattgattatatttgaaatagatgaagtagtaataata 24575057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 18 - 176
Target Start/End: Complemental strand, 9280287 - 9280131
Alignment:
Q  18 caaagtgtaacatgtaatttcttttattaatatttatattactcatacgcaataaaataataggtttgatacaaaatataacacaaatttattaaaaaag 117  Q
    |||||||||| ||||||||| ||||  ||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  9280287 caaagtgtaatatgtaatttttttt--taatattaatattactcatacacaataaaataataggtttgatacaaaatatgacacaaatttattaaaaaag 9280190  T
Q  118 ttaacattacacaagaaaaatgatttattatatttgaaatagatgaagtagtaataata 176  Q
    ||||||||||||||  ||||||||| ||||||||||||||||||| |||||||||||||    
T  9280189 ttaacattacacaatgaaaatgattgattatatttgaaatagatgtagtagtaataata 9280131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 18 - 176
Target Start/End: Complemental strand, 7700646 - 7700487
Alignment:
Q  18 caaagtgtaacatgtaatttctttt-attaatatttatattactcatacgcaataaaataataggtttgatacaaaatataacacaaatttattaaaaaa 116  Q
    |||||||||||||||||||| |||| ||||||||| ||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||| ||||    
T  7700646 caaagtgtaacatgtaatttttttttattaatattaatattactcatacacaataaaataatatgtttgatacaaaatatgacacaaatttattagaaaa 7700547  T
Q  117 gttaacattacacaagaaaaatgatttattatatttgaaatagatgaagtagtaataata 176  Q
    ||||||||| |||||  ||||||| | |||||||||||||||||||||||||||||||||    
T  7700546 gttaacatttcacaatgaaaatgaatgattatatttgaaatagatgaagtagtaataata 7700487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 52 - 176
Target Start/End: Original strand, 18780705 - 18780829
Alignment:
Q  52 tatattactcatacgcaataaaataataggtttgatacaaaatataacacaaatttattaaaaaagttaacattacacaagaaaaatgatttattatatt 151  Q
    ||||||| |||||| |||||||||||||||||||||| |||||||  ||||||||||| ||||||| |||||||||| || |||||||||| ||||||||    
T  18780705 tatattattcatacacaataaaataataggtttgatataaaatatgtcacaaatttatcaaaaaaggtaacattacagaataaaaatgattgattatatt 18780804  T
Q  152 tgaaatagatgaagtagtaataata 176  Q
    |||||||||||||||||||||||||    
T  18780805 tgaaatagatgaagtagtaataata 18780829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 282 - 379
Target Start/End: Original strand, 24575174 - 24575272
Alignment:
Q  282 ggttcgatttggttttgaaaacgcaatccgaaatccaatccgatcatagcggtttttccataacaacattcaagcacat-caaaaatattcggtttttt 379  Q
    |||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||| ||||| |||||||||||||||||||    
T  24575174 ggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatattcggtttttt 24575272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 282 - 379
Target Start/End: Complemental strand, 9280014 - 9279916
Alignment:
Q  282 ggttcgatttggttttgaaaacgcaatccgaaatccaatccgatcatagcggtttttccataacaacattcaagcacat-caaaaatattcggtttttt 379  Q
    |||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||| || || |||||||||||||||||||    
T  9280014 ggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacaaatccaaaaatattcggtttttt 9279916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 34 - 173
Target Start/End: Complemental strand, 56078772 - 56078633
Alignment:
Q  34 atttcttttattaatatttatattactcatacgcaataaaataataggtttgatacaaaatataacacaaatttattaaaaaagttaacattacacaaga 133  Q
    |||| ||||||||||||| ||||||| ||||| | |||||||||||| || ||| ||||| ||||||||||| |||||||| | |||||||||||  |      
T  56078772 attttttttattaatattaatattacacatacaccataaaataatagtttcgatgcaaaacataacacaaatgtattaaaagaattaacattacatgatg 56078673  T
Q  134 aaaatgatttattatatttgaaatagatgaagtagtaata 173  Q
    |||||||| | |||||||||||| | ||||||| ||||||    
T  56078672 aaaatgatatgttatatttgaaacatatgaagttgtaata 56078633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 102 - 176
Target Start/End: Original strand, 46251799 - 46251873
Alignment:
Q  102 aaatttattaaaaaagttaacattacacaagaaaaatgatttattatatttgaaatagatgaagtagtaataata 176  Q
    |||| |||||||||| ||||| ||||||||  ||||||||| |||||||||||||||||||||||||||||||||    
T  46251799 aaatgtattaaaaaaattaactttacacaatgaaaatgattgattatatttgaaatagatgaagtagtaataata 46251873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 273 - 379
Target Start/End: Original strand, 46251931 - 46252038
Alignment:
Q  273 tactgttgcggttcgatttggttttgaaaacgcaatccgaaatccaatccgatcatagcggtttttccataacaacattcaagcacat-caaaaatattc 371  Q
    |||| |||||||||| || ||||||||||| |  ||||||||||| | || |||||||||| ||||||| |||||||| ||| ||||| |||||||||||    
T  46251931 tacttttgcggttcggttcggttttgaaaaggtgatccgaaatccgaaccaatcatagcggcttttccaaaacaacatccaaacacatccaaaaatattc 46252030  T
Q  372 ggtttttt 379  Q
    ||||||||    
T  46252031 ggtttttt 46252038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 102 - 176
Target Start/End: Original strand, 47498706 - 47498780
Alignment:
Q  102 aaatttattaaaaaagttaacattacacaagaaaaatgatttattatatttgaaatagatgaagtagtaataata 176  Q
    |||| |||||||||| || || ||||||||  ||||||||| |||||||||||||||||||||||||||||||||    
T  47498706 aaatgtattaaaaaaattgactttacacaatgaaaatgattgattatatttgaaatagatgaagtagtaataata 47498780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 281 - 379
Target Start/End: Original strand, 47498856 - 47498955
Alignment:
Q  281 cggttcgatttggttttgaaaacgcaatccgaaatccaatccgatcatagcggtttttccataacaacattcaagcacat-caaaaatattcggtttttt 379  Q
    ||||||| || |||||| |||| |  ||||||||||| | || |||||||||||||||||| |||||||| ||| ||||| |||||||||||||||||||    
T  47498856 cggttcggttcggttttaaaaaggtgatccgaaatccgaaccaatcatagcggtttttccaaaacaacatccaaacacatccaaaaatattcggtttttt 47498955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 283 - 379
Target Start/End: Original strand, 18780947 - 18781044
Alignment:
Q  283 gttcgatttggttttgaaaacgcaatccgaaatccaatccgatcatagcggtttttccataacaacattcaagcacat-caaaaatattcggtttttt 379  Q
    |||||||||  ||||||||||| ||| |||||||  ||| ||||||| ||||||||||| ||||| |||||| ||||| |||||||||||| ||||||    
T  18780947 gttcgattttattttgaaaacgtaattcgaaatctgatctgatcataacggtttttccaaaacaaaattcaaacacatccaaaaatattcgatttttt 18781044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 307 - 371
Target Start/End: Original strand, 47997031 - 47997096
Alignment:
Q  307 atccgaaatccaatccgatcatagcggtttttccataacaacattcaagcacatc-aaaaatattc 371  Q
    ||||||||||| |||||||| ||||||||||| || ||||||||||||||||||| ||||||||||    
T  47997031 atccgaaatccgatccgatcctagcggtttttacaaaacaacattcaagcacatcgaaaaatattc 47997096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 46251738 - 46251786
Alignment:
Q  71 aaaataataggtttgatacaaaatataacacaaatttattaaaaaagtt 119  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  46251738 aaaataataagtttgatacaaaatataacacaaatgtattaaaaaagtt 46251786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 47498645 - 47498693
Alignment:
Q  71 aaaataataggtttgatacaaaatataacacaaatttattaaaaaagtt 119  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  47498645 aaaataataagtttgatacaaaatataacacaaatgtattaaaaaagtt 47498693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 293 - 350
Target Start/End: Complemental strand, 7700359 - 7700302
Alignment:
Q  293 gttttgaaaacgcaatccgaaatccaatccgatcatagcggtttttccataacaacat 350  Q
    ||||||||||||||||| ||||| | ||||||||||||||||||||| | ||||||||    
T  7700359 gttttgaaaacgcaatctgaaattcgatccgatcatagcggtttttctaaaacaacat 7700302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 379
Target Start/End: Complemental strand, 3757042 - 3756954
Alignment:
Q  292 ggttttgaaaacgcaatccgaaatccaatccgatcatagcggtttttccataacaacattcaagcacat-caaaaatattcggtttttt 379  Q
    ||||||||||| |  ||||||||||| |||||||| || ||||||||  | |||||||||||| | ||| |||| ||||||||||||||    
T  3757042 ggttttgaaaaagtgatccgaaatccgatccgatcttaacggtttttaaaaaacaacattcaaacgcatccaaacatattcggtttttt 3756954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 379
Target Start/End: Original strand, 42414576 - 42414664
Alignment:
Q  292 ggttttgaaaacgcaatccgaaatccaatccgatcatagcggtttttccataacaacattcaagcacat-caaaaatattcggtttttt 379  Q
    ||||||||||| |  |||| |||||| |||||||| ||||||||||| || |||||||| ||| | ||| |||| ||||||||||||||    
T  42414576 ggttttgaaaaagtgatccaaaatccgatccgatcttagcggtttttacaaaacaacatccaaacgcatccaaatatattcggtttttt 42414664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 289 - 379
Target Start/End: Complemental strand, 20580674 - 20580583
Alignment:
Q  289 tttggttttgaaaacgcaatccgaaatccaatccgatcatagcggtttttccataacaacattcaagcacat-caaaaatattcggtttttt 379  Q
    |||||||||||||| |  ||| ||||||| |||||||| ||||  || || || |||||||||||||| ||| |||||||||| ||||||||    
T  20580674 tttggttttgaaaaagtgatctgaaatccgatccgatcctagcaattcttacaaaacaacattcaagcgcatccaaaaatatttggtttttt 20580583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 97
Target Start/End: Complemental strand, 7612022 - 7611957
Alignment:
Q  32 taatttcttttattaatatttatattactcatacgcaataaaataataggtttgatacaaaatata 97  Q
    |||||| ||||||||||||| ||||||| || || |  ||||||||||||||||||  ||||||||    
T  7612022 taattttttttattaatattcatattacacaaacactgtaaaataataggtttgatgtaaaatata 7611957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 120; Significance: 3e-61; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 18 - 176
Target Start/End: Original strand, 19636289 - 19636448
Alignment:
Q  18 caaagtgtaacatgtaatttctttta-ttaatatttatattactcatacgcaataaaataataggtttgatacaaaatataacacaaatttattaaaaaa 116  Q
    |||||||||||||||||||| ||||  |||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  19636289 caaagtgtaacatgtaatttttttttgttaatattaatattactcatacacaataaaataataggtttgatacaaaatatgacacaaatttattaaaaaa 19636388  T
Q  117 gttaacattacacaagaaaaatgatttattatatttgaaatagatgaagtagtaataata 176  Q
    |||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||    
T  19636389 gttaacattacacaatgaaaatgattgattatatttgaaatagatgaagtagtaataata 19636448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 18 - 176
Target Start/End: Original strand, 37282391 - 37282547
Alignment:
Q  18 caaagtgtaacatgtaatttcttttattaatatttatattactcatacgcaataaaataataggtttgatacaaaatataacacaaatttattaaaaaag 117  Q
    |||||||||||||||||||| ||||  ||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  37282391 caaagtgtaacatgtaatttttttt--taatattaatattactcatacacaataaaataataggtttgatacaaaatatgacacaaatttattaaaaaag 37282488  T
Q  118 ttaacattacacaagaaaaatgatttattatatttgaaatagatgaagtagtaataata 176  Q
    ||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||    
T  37282489 ttaacattacacaatgaaaatgattgattatatttgaaatagatgaagtagtaataata 37282547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 18 - 176
Target Start/End: Original strand, 48973483 - 48973642
Alignment:
Q  18 caaagtgtaacatgtaatttctttt-attaatatttatattactcatacgcaataaaataataggtttgatacaaaatataacacaaatttattaaaaaa 116  Q
    |||||||||||||||||||| |||| ||||||||| ||||||||||||| || ||||||||||| ||||||||||||||| |||||||||||||||||||    
T  48973483 caaagtgtaacatgtaatttttttttattaatattaatattactcatacacattaaaataatagttttgatacaaaatatgacacaaatttattaaaaaa 48973582  T
Q  117 gttaacattacacaagaaaaatgatttattatatttgaaatagatgaagtagtaataata 176  Q
    |||||||||||||||  ||||||||| ||||||||||||||| |||||||||||||||||    
T  48973583 gttaacattacacaatgaaaatgattgattatatttgaaatatatgaagtagtaataata 48973642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 102 - 176
Target Start/End: Complemental strand, 25706542 - 25706468
Alignment:
Q  102 aaatttattaaaaaagttaacattacacaagaaaaatgatttattatatttgaaatagatgaagtagtaataata 176  Q
    |||| |||||||||| ||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||    
T  25706542 aaatgtattaaaaaaattaacattacacaatgaaaatgattgattatatttgaaatagatgaagtagtaataata 25706468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 39 - 176
Target Start/End: Original strand, 16215371 - 16215508
Alignment:
Q  39 ttttattaatatttatattactcatacgcaataaaataataggtttgatacaaaatataacacaaatttattaaaaaagttaacattacacaagaaaaat 138  Q
    ||||||||||||| ||||||| |||||    || ||||||| ||||||| |||||||||||| |||| |||| ||||| ||||||||||| ||  |||||    
T  16215371 ttttattaatattaatattacacatacaaggtagaataatatgtttgatgcaaaatataacataaatatatttaaaaaattaacattacataatgaaaat 16215470  T
Q  139 gatttattatatttgaaatagatgaagtagtaataata 176  Q
    |||  |||||||| |||| | |||||||||||||||||    
T  16215471 gatcgattatattcgaaacatatgaagtagtaataata 16215508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 282 - 350
Target Start/End: Original strand, 37282664 - 37282732
Alignment:
Q  282 ggttcgatttggttttgaaaacgcaatccgaaatccaatccgatcatagcggtttttccataacaacat 350  Q
    |||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  37282664 ggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacat 37282732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 25706657 - 25706555
Alignment:
Q  18 caaagtgtaacatgtaatttctttt-attaatatttatattactcatacgcaataaaataataggtttgatacaaaatataacacaaatttattaaaaaa 116  Q
    ||||||| ||||| |||||| |||| ||||||||| ||||||| ||| |  |  ||||||||||||||||||||||||||||||||||| ||||||||||    
T  25706657 caaagtgcaacatttaatttttttttattaatattaatattacacatgcatagaaaaataataggtttgatacaaaatataacacaaatgtattaaaaaa 25706558  T
Q  117 gtt 119  Q
    |||    
T  25706557 gtt 25706555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 102 - 175
Target Start/End: Original strand, 32055707 - 32055780
Alignment:
Q  102 aaatttattaaaaaagttaacattacacaagaaaaatgatttattatatttgaaatagatgaagtagtaataat 175  Q
    |||| |||||||||| ||||| ||||||||  ||||||||| ||||||||||||||||||||||||||||||||    
T  32055707 aaatgtattaaaaaaattaactttacacaatgaaaatgattgattatatttgaaatagatgaagtagtaataat 32055780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 34 - 119
Target Start/End: Original strand, 39717004 - 39717089
Alignment:
Q  34 atttcttttattaatatttatattactcatacgcaataaaataataggtttgatacaaaatataacacaaatttattaaaaaagtt 119  Q
    |||| ||||||||||||| ||||||| ||| |  |  ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  39717004 attttttttattaatattaatattacacatgcatagaaaaataataggtttgatacaaaatataacacaaatgtattaaaaaagtt 39717089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 102 - 176
Target Start/End: Original strand, 39717103 - 39717177
Alignment:
Q  102 aaatttattaaaaaagttaacattacacaagaaaaatgatttattatatttgaaatagatgaagtagtaataata 176  Q
    |||| |||||||||| ||||||||||||||  ||||||||| ||||||||||||||| | |||||||||||||||    
T  39717103 aaatgtattaaaaaaattaacattacacaatgaaaatgattgattatatttgaaataaacgaagtagtaataata 39717177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 26 - 116
Target Start/End: Original strand, 51580445 - 51580534
Alignment:
Q  26 aacatgtaatttcttttattaatatttatattactcatacgcaataaaataataggtttgatacaaaatataacacaaatttattaaaaaa 116  Q
    ||||||||||||||||||| |||||| ||||||  |||| |   |||||||||||||||||| |||||||||||| |||| ||||||||||    
T  51580445 aacatgtaatttcttttatcaatattaatattatacatatggg-taaaataataggtttgatgcaaaatataacataaatatattaaaaaa 51580534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 282 - 350
Target Start/End: Original strand, 19636565 - 19636633
Alignment:
Q  282 ggttcgatttggttttgaaaacgcaatccgaaatccaatccgatcatagcggtttttccataacaacat 350  Q
    |||||| || |||||||||||| ||||||||||||| |||||||||| |||| ||||||| ||||||||    
T  19636565 ggttcggttcggttttgaaaactcaatccgaaatccgatccgatcatcgcggcttttccaaaacaacat 19636633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 292 - 379
Target Start/End: Original strand, 32055898 - 32055986
Alignment:
Q  292 ggttttgaaaacgcaatccgaaatccaatccgatcatagcggtttttccataacaacattcaagcacat-caaaaatattcggtttttt 379  Q
    ||||||||||| |  ||||||||||| | || |||||||||||||| ||| |||||||| ||| ||||| |||||||||||||||||||    
T  32055898 ggttttgaaaatgtgatccgaaatccgaaccaatcatagcggttttgccaaaacaacatccaaacacatccaaaaatattcggtttttt 32055986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 48 - 156
Target Start/End: Original strand, 48082650 - 48082757
Alignment:
Q  48 tatttatattactcatacgcaataaaataataggtttgatacaaaatataacacaaatttattaaaaaagttaacattacacaagaaaaatgatttatta 147  Q
    |||| ||||||| ||||| || |||||||||||| |||||  |||||||||||||||| ||||||||||  |||||||||| ||  ||||| ||  ||||    
T  48082650 tattaatattacacatacacagtaaaataataggcttgatgtaaaatataacacaaatctattaaaaaa-ataacattacataatgaaaattatcgatta 48082748  T
Q  148 tatttgaaa 156  Q
    |||||||||    
T  48082749 tatttgaaa 48082757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 70 - 173
Target Start/End: Complemental strand, 45701318 - 45701216
Alignment:
Q  70 taaaataataggtttgatacaaaatataacacaaatttattaaaaaagttaacattacacaagaaaaatgatttattatatttgaaatagatgaagtagt 169  Q
    |||||||||| ||||||| |||||||||||| |||| |||||||||| ||||| ||||| ||  ||||| ||  ||||||||| ||| | ||||||||||    
T  45701318 taaaataatatgtttgatgcaaaatataacataaatatattaaaaaa-ttaactttacaaaatgaaaataatcgattatattttaaacatatgaagtagt 45701220  T
Q  170 aata 173  Q
    ||||    
T  45701219 aata 45701216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 32055646 - 32055694
Alignment:
Q  71 aaaataataggtttgatacaaaatataacacaaatttattaaaaaagtt 119  Q
    ||||||||| |||||||||| |||||||||||||| |||||||||||||    
T  32055646 aaaataataagtttgatacagaatataacacaaatgtattaaaaaagtt 32055694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 68 - 115
Target Start/End: Complemental strand, 24461945 - 24461898
Alignment:
Q  68 aataaaataataggtttgatacaaaatataacacaaatttattaaaaa 115  Q
    ||||||||||||| |||||| ||||||||||||||||| |||| ||||    
T  24461945 aataaaataatagatttgatgcaaaatataacacaaatatatttaaaa 24461898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 174
Target Start/End: Original strand, 32033836 - 32033941
Alignment:
Q  69 ataaaataataggtttgatacaaaatataacaca-aatttattaaaaaagttaacattacacaagaaaaatgatttattatatttgaaatagatgaagta 167  Q
    |||||||||||||||||||||  ||||||||| |  ||||| ||||| | |||| |||||| || |||||||||| ||||| ||||||| | ||||| ||    
T  32033836 ataaaataataggtttgatacggaatataacatatgattta-taaaacaattaatattacaaaataaaaatgattgattatctttgaaacatatgaaata 32033934  T
Q  168 gtaataa 174  Q
    | |||||    
T  32033935 gaaataa 32033941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 379
Target Start/End: Complemental strand, 1030525 - 1030452
Alignment:
Q  307 atccgaaatccaatccgatcatagcggtttttccataacaacattcaagcacat-caaaaatattcggtttttt 379  Q
    |||| |||||| |||||||| ||||||||||| || |||||||| ||| | ||| |||| ||||||||||||||    
T  1030525 atccaaaatccgatccgatcttagcggtttttacaaaacaacatccaaacgcatccaaatatattcggtttttt 1030452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 379
Target Start/End: Original strand, 40166829 - 40166902
Alignment:
Q  307 atccgaaatccaatccgatcatagcggtttttccataacaacattcaagcacatc-aaaaatattcggtttttt 379  Q
    |||||| |||| |||  ||| ||||||||||| || |||||||||||| |||||| ||| ||||||||||||||    
T  40166829 atccgatatccgatcgaatcttagcggtttttacaaaacaacattcaaacacatctaaatatattcggtttttt 40166902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 120; Significance: 3e-61; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 18 - 176
Target Start/End: Complemental strand, 16672375 - 16672219
Alignment:
Q  18 caaagtgtaacatgtaatttcttttattaatatttatattactcatacgcaataaaataataggtttgatacaaaatataacacaaatttattaaaaaag 117  Q
    |||||||||||||||||||| ||||  ||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  16672375 caaagtgtaacatgtaatttttttt--taatattaatattactcatacacaataaaataataggtttgatacaaaatatgacacaaatttattaaaaaag 16672278  T
Q  118 ttaacattacacaagaaaaatgatttattatatttgaaatagatgaagtagtaataata 176  Q
    ||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||    
T  16672277 ttaacattacacaatgaaaatgattgattatatttgaaatagatgaagtagtaataata 16672219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 282 - 381
Target Start/End: Complemental strand, 16672102 - 16672001
Alignment:
Q  282 ggttcgatttggttttgaaaacgcaatccgaaatccaatccgatcatagcggtttttccataacaacattcaa-gcacat-caaaaatattcggtttttt 379  Q
    |||||| || |||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||| |||  ||||| |||||||||||||||||||    
T  16672102 ggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcagtttttccaaaacaacatccaacacacatccaaaaatattcggtttttt 16672003  T
Q  380 ac 381  Q
    ||    
T  16672002 ac 16672001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 102 - 175
Target Start/End: Complemental strand, 18511820 - 18511747
Alignment:
Q  102 aaatttattaaaaaagttaacattacacaagaaaaatgatttattatatttgaaatagatgaagtagtaataat 175  Q
    |||| |||||||||| ||||| ||||||||  ||||||||| |||||||||||||||||||| |||||||||||    
T  18511820 aaatgtattaaaaaaattaactttacacaatgaaaatgattgattatatttgaaatagatgatgtagtaataat 18511747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 18511881 - 18511833
Alignment:
Q  71 aaaataataggtttgatacaaaatataacacaaatttattaaaaaagtt 119  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  18511881 aaaataataagtttgatacaaaatataacacaaatgtattaaaaaagtt 18511833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 126
Target Start/End: Original strand, 23481748 - 23481831
Alignment:
Q  42 tattaatatttatattactcatacgcaataaaataataggtttgatacaaaatataacacaaatttattaaaaaagttaacatta 126  Q
    |||||||||| |||| || ||||| |  |||||||||||||||||  |||||||||| |||||| |||| ||||| |||||||||    
T  23481748 tattaatattcatatcacacatacacggtaaaataataggtttgaagcaaaatataaaacaaatatatttaaaaa-ttaacatta 23481831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 34440250 - 34440188
Alignment:
Q  18 caaagtgtaacatgtaatttcttttattaatatttatattactcatacgcaataaaataatag 80  Q
    ||||||| ||||| |||||  ||||||||||| | ||||||| ||||| ||||||||||||||    
T  34440250 caaagtgcaacatataattatttttattaatactaatattacacatacacaataaaataatag 34440188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 379
Target Start/End: Complemental strand, 18511601 - 18511548
Alignment:
Q  327 atagcggtttttccataacaacattcaagcacat-caaaaatattcggtttttt 379  Q
    ||||||||||| ||| |||||||| ||| ||||| |||||||||||||||||||    
T  18511601 atagcggttttgccaaaacaacatccaaacacatccaaaaatattcggtttttt 18511548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 96
Target Start/End: Complemental strand, 22596665 - 22596608
Alignment:
Q  39 ttttattaatatttatattactcatacgcaataaaataataggtttgatacaaaatat 96  Q
    ||||||||||||| ||||||| || || |  |||||||||||||||||| ||||||||    
T  22596665 ttttattaatattaatattacacaaacacggtaaaataataggtttgatgcaaaatat 22596608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 176
Target Start/End: Complemental strand, 34440172 - 34440060
Alignment:
Q  67 caataaaataataggtttgat--acaaaatataacacaaat-ttattaaaaaagttaacattacacaagaaaaatgatttattatatttgaaatagatga 163  Q
    |||||||||||||||||||||  | || ||||||||||| | || | |||||| |||||||| || ||  ||||||||  ||||||||| ||||| ||||    
T  34440172 caataaaataataggtttgatgcataatatataacacaattcttttaaaaaaaattaacattgcataatgaaaatgatcgattatatttaaaatatatga 34440073  T
Q  164 agtagtaataata 176  Q
     || |||||||||    
T  34440072 tgttgtaataata 34440060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 97
Target Start/End: Original strand, 42295580 - 42295645
Alignment:
Q  32 taatttcttttattaatatttatattactcatacgcaataaaataataggtttgatacaaaatata 97  Q
    |||||| ||||||||||||| ||||||| || ||    |||||||||||||||||| |||||||||    
T  42295580 taattttttttattaatattaatattacacaaacaaggtaaaataataggtttgatgcaaaatata 42295645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 292 - 379
Target Start/End: Original strand, 21352337 - 21352425
Alignment:
Q  292 ggttttgaaaacgcaatccgaaatccaatccgatcatagcggtttttccataacaacattcaagcacat-caaaaatattcggtttttt 379  Q
    ||||||||||| |  |||| |||||| |||||||| ||||||||||| || |||||||| ||| | ||| |||| ||||||| ||||||    
T  21352337 ggttttgaaaaagtgatccaaaatccgatccgatcttagcggtttttacaaaacaacatccaaacgcatccaaatatattcgatttttt 21352425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 116; Significance: 7e-59; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 18 - 176
Target Start/End: Original strand, 7608026 - 7608182
Alignment:
Q  18 caaagtgtaacatgtaatttcttttattaatatttatattactcatacgcaataaaataataggtttgatacaaaatataacacaaatttattaaaaaag 117  Q
    |||||||||||||||| ||| ||||  ||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  7608026 caaagtgtaacatgtactttttttt--taatattaatattactcatacacaataaaataataggtttgatacaaaatatgacacaaatttattaaaaaag 7608123  T
Q  118 ttaacattacacaagaaaaatgatttattatatttgaaatagatgaagtagtaataata 176  Q
    ||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||    
T  7608124 ttaacattacacaatgaaaatgattgattatatttgaaatagatgaagtagtaataata 7608182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 18 - 176
Target Start/End: Original strand, 16705108 - 16705267
Alignment:
Q  18 caaagtgtaacatgtaatttcttttatt-aatatttatattactcatacgcaataaaataataggtttgatacaaaatataacacaaatttattaaaaaa 116  Q
    |||||||||||||||||||| |||| || |||||| ||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  16705108 caaagtgtaacatgtaattttttttttttaatattaatattactcatacacaataaaataagaggtttgatacaaaatatgacacaaatttattaaaaaa 16705207  T
Q  117 gttaacattacacaagaaaaatgatttattatatttgaaatagatgaagtagtaataata 176  Q
    |||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||    
T  16705208 gttaacattacacaatgaaaatgattgattatatttgaaatagatgaagtagtaataata 16705267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 282 - 379
Target Start/End: Original strand, 7608299 - 7608397
Alignment:
Q  282 ggttcgatttggttttgaaaacgcaatccgaaatccaatccgatcatagcggtttttccataacaacattcaagcacat-caaaaatattcggtttttt 379  Q
    |||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||| || || |||||||||||||||||||    
T  7608299 ggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacaaatccaaaaatattcggtttttt 7608397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 26 - 176
Target Start/End: Original strand, 10517370 - 10517518
Alignment:
Q  26 aacatgtaatttcttttattaatatttatattactcatacgcaataaaataataggtttgatacaaaatataacacaaatttattaaaaaagttaacatt 125  Q
    ||||||| |||| ||||||||||||| |||| |  ||||| ||  ||||||||| ||||||||||||||||||||||||| |||||||||  ||||||||    
T  10517370 aacatgtcatttattttattaatattaatatcatacatacacatcaaaataatatgtttgatacaaaatataacacaaatatattaaaaa--ttaacatt 10517467  T
Q  126 acacaagaaaaatgatttattatatttgaaatagatgaagtagtaataata 176  Q
     || || ||||||| |  |||||||| |||| | |||||||||||||||||    
T  10517468 tcataataaaaatggtcgattatattagaaacatatgaagtagtaataata 10517518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 270 - 379
Target Start/End: Original strand, 16705362 - 16705465
Alignment:
Q  270 atttactgttgcggttcgatttggttttgaaaacgcaatccgaaatccaatccgatcatagcggtttttccataacaacattcaagcacat-caaaaata 368  Q
    ||||||| |||||||||| || |||||||||||||||||||||       |||||||||||||||||||||| |||||||| ||| ||||| ||||||||    
T  16705362 atttacttttgcggttcggttcggttttgaaaacgcaatccga-------tccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaata 16705454  T
Q  369 ttcggtttttt 379  Q
    |||| ||||||    
T  16705455 ttcgatttttt 16705465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 18 - 116
Target Start/End: Complemental strand, 30395927 - 30395828
Alignment:
Q  18 caaagtgtaacatgtaatttctttt-attaatatttatattactcatacgcaataaaataataggtttgatacaaaatataacacaaatttattaaaaaa 116  Q
    ||||||| || ||||||||| |||| ||||||||| ||||||  ||||| |||||||  |||||||||||| ||||||||||||||||| ||||||||||    
T  30395927 caaagtgcaatatgtaatttttttttattaatattaatattatacatacacaataaaggaataggtttgatgcaaaatataacacaaatctattaaaaaa 30395828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 102 - 176
Target Start/End: Complemental strand, 21946950 - 21946876
Alignment:
Q  102 aaatttattaaaaaagttaacattacacaagaaaaatgatttattatatttgaaatagatgaagtagtaataata 176  Q
    |||| |||||||||| |||||| |||||||  ||||||||| ||||||||||||||||||||||| |||||||||    
T  21946950 aaatgtattaaaaaaattaacactacacaatgaaaatgattgattatatttgaaatagatgaagtggtaataata 21946876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 21947011 - 21946963
Alignment:
Q  71 aaaataataggtttgatacaaaatataacacaaatttattaaaaaagtt 119  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  21947011 aaaataataagtttgatacaaaatataacacaaatgtattaaaaaagtt 21946963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 293 - 338
Target Start/End: Original strand, 10484409 - 10484454
Alignment:
Q  293 gttttgaaaacgcaatccgaaatccaatccgatcatagcggttttt 338  Q
    ||||||| || |||||||||||||||||||||||||||||||||||    
T  10484409 gttttgagaaagcaatccgaaatccaatccgatcatagcggttttt 10484454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 307 - 379
Target Start/End: Complemental strand, 21946774 - 21946701
Alignment:
Q  307 atccgaaatccaatccgatcatagcggtttttccataacaacattcaagcacatca-aaaatattcggtttttt 379  Q
    ||||||||||| | || || ||||||||||||||| |||||||| ||| ||||||| |||||||||||||||||    
T  21946774 atccgaaatccgaaccaattatagcggtttttccaaaacaacatccaaacacatcaaaaaatattcggtttttt 21946701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 116; Significance: 7e-59; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 18 - 176
Target Start/End: Complemental strand, 40987702 - 40987546
Alignment:
Q  18 caaagtgtaacatgtaatttcttttattaatatttatattactcatacgcaataaaataataggtttgatacaaaatataacacaaatttattaaaaaag 117  Q
    |||||||||||||||||||| ||||  ||||||| ||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  40987702 caaagtgtaacatgtaatttttttt--taatattaatattactcatacacaataaaataatcggtttgatacaaaatatgacacaaatttattaaaaaag 40987605  T
Q  118 ttaacattacacaagaaaaatgatttattatatttgaaatagatgaagtagtaataata 176  Q
    ||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||    
T  40987604 ttaacattacacaatgaaaatgattgattatatttgaaatagatgaagtagtaataata 40987546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 20 - 176
Target Start/End: Complemental strand, 13521838 - 13521683
Alignment:
Q  20 aagtgtaacatgtaatttcttttattaatatttatattactcatacgcaataaaataataggtttgatacaaaatataacacaaatttattaaaaaagtt 119  Q
    |||||||||||||||| | |||||| |||||| ||||||||||||  |||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  13521838 aagtgtaacatgtaatat-ttttatcaatattaatattactcatatacaataaaatagtaggtttgatacaaaatatgacacaaatttattaaaaaagtt 13521740  T
Q  120 aacattacacaagaaaaatgatttattatatttgaaatagatgaagtagtaataata 176  Q
    ||||||||||||  ||||||||| ||||||||||| |||||||||||||||||||||    
T  13521739 aacattacacaatgaaaatgattgattatatttgatatagatgaagtagtaataata 13521683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 18 - 176
Target Start/End: Complemental strand, 13555132 - 13554974
Alignment:
Q  18 caaagtgtaacatgtaatttcttttattaatatttatattactcatacgcaataaaataataggtttgatacaaaatataacacaaatttattaaaaaag 117  Q
    |||||||||||||||||||| |||||| |||||| ||||||||||||  |||||||||| |||||||| |||||||||| ||||||||||||||||||||    
T  13555132 caaagtgtaacatgtaattttttttatcaatattaatattactcatatacaataaaatagtaggtttggtacaaaatatgacacaaatttattaaaaaag 13555033  T
Q  118 ttaacattacacaagaaaaatgatttattatatttgaaatagatgaagtagtaataata 176  Q
    |||||||||| |||  ||||||||| |||||| |||| |||||||||||||||||||||    
T  13555032 ttaacattacccaatgaaaatgattgattatacttgatatagatgaagtagtaataata 13554974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 282 - 379
Target Start/End: Complemental strand, 40987429 - 40987331
Alignment:
Q  282 ggttcgatttggttttgaaaacgcaatccgaaatccaatccgatcatagcggtttttccataacaacattcaagcacat-caaaaatattcggtttttt 379  Q
    |||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||| ||||| |||||||||||||||||||    
T  40987429 ggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatattcggtttttt 40987331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 18 - 158
Target Start/End: Original strand, 42715889 - 42716031
Alignment:
Q  18 caaagtgtaacatgtaatttcttttattaatatttatattactcatacgcaataaaataataggtttgatacaaaatataacacaaatttatt--aaaaa 115  Q
    ||||||| |||||||||||| ||| ||||||||| |||||||  | |||||||| |||||||||||| || ||||||||||||||||| ||||  |||||    
T  42715889 caaagtgcaacatgtaatttttttaattaatattgatattacaaaaacgcaatagaataataggttttatgcaaaatataacacaaatatattaaaaaaa 42715988  T
Q  116 agttaacattacacaagaaaaatgatttattatatttgaaata 158  Q
    |  |||||||||| || |||||||||  ||| ||| |||||||    
T  42715989 aaataacattacataataaaaatgatcaattttatatgaaata 42716031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 270 - 381
Target Start/End: Complemental strand, 13521592 - 13521480
Alignment:
Q  270 atttactgttgcggttcgatttggttttgaaaacgcaatccgaaatccaatccgatcatagcggtttttccataacaacattcaagcacat-caaaaata 368  Q
    ||||||| |||||||||| || ||||||||||| |||||  ||||||| |||   ||||||||||| ||||| ||||||||  || ||||| ||||||||    
T  13521592 atttacttttgcggttcggttcggttttgaaaatgcaatttgaaatccgatctagtcatagcggttattccaaaacaacatctaaacacatccaaaaata 13521493  T
Q  369 ttcggttttttac 381  Q
    |||||||||||||    
T  13521492 ttcggttttttac 13521480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 292 - 372
Target Start/End: Complemental strand, 13554847 - 13554766
Alignment:
Q  292 ggttttgaaaacgcaatccgaaatccaatccgatcatagcggtttttccataacaacattcaagcacatc-aaaaatattcg 372  Q
    ||||||||||| ||||| |||||||| |||  || ||||||||||||||| |||||||| ||| |||||| |||||||||||    
T  13554847 ggttttgaaaatgcaattcgaaatccgatctaattatagcggtttttccaaaacaacatccaaacacatctaaaaatattcg 13554766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 97
Target Start/End: Original strand, 17342246 - 17342311
Alignment:
Q  32 taatttcttttattaatatttatattactcatacgcaataaaataataggtttgatacaaaatata 97  Q
    |||||| ||||||||||||| ||||||| || || || ||||||||||||||||||||||| ||||    
T  17342246 taattttttttattaatattaatattacacaaacacagtaaaataataggtttgatacaaactata 17342311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 292 - 382
Target Start/End: Original strand, 1495915 - 1496006
Alignment:
Q  292 ggttttgaaaacgcaatccgaaatccaatccgatcatagcggtttttccataacaacattcaagcacat-caaaaatattcggttttttaca 382  Q
    ||||||||||| |  |||||||| || |||||||| ||||||||||| || ||||| || ||| ||||| |||| |||||||||||||||||    
T  1495915 ggttttgaaaaggtgatccgaaacccgatccgatcttagcggtttttacaaaacaatatccaaacacatccaaatatattcggttttttaca 1496006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 26 - 97
Target Start/End: Complemental strand, 17035374 - 17035304
Alignment:
Q  26 aacatgtaatttcttttattaatatttatattactcatacgcaataaaataataggtttgatacaaaatata 97  Q
    ||||||||| || ||||||||||||||||||||| ||||| | ||||||||||| |||| || |||||||||    
T  17035374 aacatgtaaatt-ttttattaatatttatattacacatacacgataaaataatatgtttaatgcaaaatata 17035304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 278 - 379
Target Start/End: Complemental strand, 27110748 - 27110646
Alignment:
Q  278 ttgcggttcgatttggttttgaaaacgcaatccgaaatccaatccgatcatagcggtttttccataacaacattcaagcacat-caaaaatattcggttt 376  Q
    |||||||||| || ||||||| ||| |  ||||  ||||| |||||||| ||||||||||| || |||||||| ||| ||||| |||| |||||||||||    
T  27110748 ttgcggttcggttcggttttggaaaagtgatccagaatccgatccgatcttagcggtttttacaaaacaacatccaaacacatccaaatatattcggttt 27110649  T
Q  377 ttt 379  Q
    |||    
T  27110648 ttt 27110646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 145 - 176
Target Start/End: Complemental strand, 33160715 - 33160684
Alignment:
Q  145 ttatatttgaaatagatgaagtagtaataata 176  Q
    ||||||||||||||||||||||||||||||||    
T  33160715 ttatatttgaaatagatgaagtagtaataata 33160684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 4986456 - 4986398
Alignment:
Q  39 ttttattaatatttatattactcatacgcaataaaataataggtttgatacaaaatata 97  Q
    ||||||||| ||| ||||||| || || |  ||||||||||||||||||||||||||||    
T  4986456 ttttattaacattaatattacacaaacacggtaaaataataggtttgatacaaaatata 4986398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 97
Target Start/End: Original strand, 12291138 - 12291196
Alignment:
Q  39 ttttattaatatttatattactcatacgcaataaaataataggtttgatacaaaatata 97  Q
    ||||||||| ||| ||||||| || || | ||||||||||||||||||| |||||||||    
T  12291138 ttttattaaaattaatattacacaaacacgataaaataataggtttgatgcaaaatata 12291196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 379
Target Start/End: Complemental strand, 33160595 - 33160509
Alignment:
Q  294 ttttgaaaacgcaatccgaaatccaatccgatcatagcggtttttccataacaacattcaagcacat-caaaaatattcggtttttt 379  Q
    ||||||||| |  ||||||||||| | | ||||||| | ||||||||| |||||| | ||| ||||| |||||||||||||||||||    
T  33160595 ttttgaaaaggtgatccgaaatccgaactgatcataacagtttttccaaaacaacctccaaacacatccaaaaatattcggtttttt 33160509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 97
Target Start/End: Original strand, 1495656 - 1495721
Alignment:
Q  32 taatttcttttattaatatttatattactcatacgcaataaaataataggtttgatacaaaatata 97  Q
    |||||| ||||||||||||| ||||||| || || |  | |||||||||||||||| |||||||||    
T  1495656 taattttttttattaatattaatattacacaaacacggtgaaataataggtttgatgcaaaatata 1495721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 156
Target Start/End: Complemental strand, 25932471 - 25932384
Alignment:
Q  69 ataaaataataggtttgatacaaaatataacaca-aatttattaaaaaagttaacattacacaagaaaaatgatttattatatttgaaa 156  Q
    |||||||||||||||||||||  ||||||||| |  ||||| ||||||| |||| | |||| || |||||||||| ||||| |||||||    
T  25932471 ataaaataataggtttgatacggaatataacatatgattta-taaaaaaattaatagtacaaaataaaaatgattgattatctttgaaa 25932384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 116
Target Start/End: Original strand, 32764979 - 32765027
Alignment:
Q  69 ataaaataataggtttgatacaaaatataacaca-aatttattaaaaaa 116  Q
    ||||||||||||||| |||||||||||||||| | ||||||| ||||||    
T  32764979 ataaaataataggttcgatacaaaatataacatataatttataaaaaaa 32765027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 270 - 379
Target Start/End: Original strand, 47761 - 47871
Alignment:
Q  270 atttactgttgcggttcgatttggttttgaaaacgcaatccgaaatccaatccgatcatagcggtttttccataacaacattcaagcacat-caaaaata 368  Q
    ||||||| ||||| || |||| |||||||| || |  ||||||||||| ||| |||||||||| ||||| || |||||||| ||| ||||| || |||||    
T  47761 atttacttttgcgatttgattcggttttgagaaagtgatccgaaatccgatctgatcatagcgatttttacaaaacaacatccaaacacatccacaaata 47860  T
Q  369 ttcggtttttt 379  Q
    || ||||||||    
T  47861 ttgggtttttt 47871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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