View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15836_low_5 (Length: 398)
Name: NF15836_low_5
Description: NF15836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15836_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 11 - 384
Target Start/End: Original strand, 41676817 - 41677185
Alignment:
| Q |
11 |
cagagataccaa-tatctttccctcaagttgagttctatgcacacccacacagaatgctctcttactattggaagctttttcatccacagacacttgcat |
109 |
Q |
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| T |
41676817 |
cagagacaccaactatctttccctcaagttgagttctatgcacac------aggatgctctcttattattggaagctttttcatccacatacacttgcat |
41676910 |
T |
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| Q |
110 |
cgtcatatagtcacacatcaacgaaacacactgtttgataatcactttgtcaagaagatatttcatacaataagtcggccacctttagtcaaacccttag |
209 |
Q |
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| T |
41676911 |
cgtcatatactcacacatcaacgaaacacactgtttgataatcactttgtcaagaagatatttcatacaataagtcggccacctttagtcaaacccttag |
41677010 |
T |
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| Q |
210 |
ctcaacactattattaaagtttcgtttaaacatgacaagtgtattcctttttgacgagatgtgtatgtgtagatcctattttataaattaaattatgcgt |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
41677011 |
ctcaacactattattaaagtttcgtttaaacatgacaagtgtattcctttttgacgagatgtgtatgtgtagatccttttttataaattaaattatgcgt |
41677110 |
T |
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| Q |
310 |
aggacaaaaatttagataattaacgatcaatctctaatccatagttaacaaataatttttccaagaggaaatatg |
384 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41677111 |
aggacaaaaatttagataattaacgatcaatctctaatccatagttaacaaataatttttccaagaggaaatatg |
41677185 |
T |
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