View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15836_low_6 (Length: 250)
Name: NF15836_low_6
Description: NF15836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15836_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 23 - 218
Target Start/End: Complemental strand, 24203215 - 24203020
Alignment:
| Q |
23 |
aaagatcgcaagagttgggactgtactttgtgacgacctcttgaagcgagcaagctaatcatggtggacattgcagggatcaaacaggacaatacgaaca |
122 |
Q |
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| T |
24203215 |
aaagatcgcaagagttgggactgtactttgtgacgacctcttgaagcgagcaagctaatcatggtgcacattgcagggatcaaacaggacaatacgaaca |
24203116 |
T |
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| Q |
123 |
catgagagtccatgtaagaaaatattatcaacccgaagaagctattgcgggttcgtaagggttgatttacgccgaacctaaattctaaaagtacca |
218 |
Q |
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| T |
24203115 |
catgagagtccatgtaagaaaatattatcaacccgaagaagctattgcgggttcgtaagggttgatttatgccgtacccaaattctaaaagtacca |
24203020 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 137
Target Start/End: Original strand, 29410318 - 29410390
Alignment:
| Q |
66 |
aagcgagcaagctaatcatggtggacattgcagggatcaaacaggacaatacgaac-acatgagagtccatgt |
137 |
Q |
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|||||||||||| |||||||||| |||| || ||||||||||||||||| ||| || ||||||||||||| |
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| T |
29410318 |
aagcgagcaagccaatcatggtgcacatggcgaagatcaaacaggacaatataaacaacctgagagtccatgt |
29410390 |
T |
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