View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15836_low_7 (Length: 231)
Name: NF15836_low_7
Description: NF15836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15836_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 46408696 - 46408912
Alignment:
| Q |
1 |
gtgctatattgaggttcttcccaaaccatgcaacctattattgagcatctcaatagcctcccaagtttagggttcctagaaaagatggtttccaacaaac |
100 |
Q |
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| T |
46408696 |
gtgctatattgaggttcttcccaaaccatgcaacctattattgagcatctcaatagcctcccaagtttaggactcctagaaaagatggtttccaacaaac |
46408795 |
T |
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| Q |
101 |
atcaatcagtgtacgaagggcatgatgcaacacatgtatcaaaatcaactaactgaaaaatcacttggttctttccaactaaaaatcaagaatccaaata |
200 |
Q |
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| T |
46408796 |
atcaatcagtgtacgaagggcatgatgcaacacatgtatcaaaatcaactaactgaaaaatcacttggttctttccaactaaaaatcaagaatccaaata |
46408895 |
T |
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| Q |
201 |
ataaactccactacata |
217 |
Q |
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||||||||||||||||| |
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| T |
46408896 |
ataaactccactacata |
46408912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 109
Target Start/End: Original strand, 46408666 - 46408695
Alignment:
| Q |
80 |
aaaagatggtttccaacaaacatcaatcag |
109 |
Q |
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| T |
46408666 |
aaaagatggtttccaacaaacatcaatcag |
46408695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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