View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15837_high_11 (Length: 287)
Name: NF15837_high_11
Description: NF15837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15837_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 47 - 271
Target Start/End: Complemental strand, 42019519 - 42019292
Alignment:
| Q |
47 |
ggtcacatgtctcatcttctctaacattgagttgtttgtcaccacctaatcatgcaaggttccttcctctgtattattttatgaataaggttcttccttc |
146 |
Q |
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| T |
42019519 |
ggtcacatgtctcatcttctctaacattgggttgtttgtcaccacctaatcatgcaaagttccttcctctgtattattttatgaataaggttcttccttc |
42019420 |
T |
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| Q |
147 |
tatgtactatgggtcat---tgagaatcaaatgcttccatttattgattgttgtgaccagttaagttgctgcagtcttttaccacctggaacaaccatat |
243 |
Q |
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| T |
42019419 |
tatgttctatgggtgataattgagaatcaaatgcttccatttattgattgttgtgaccagttaagttgctgcagtcttttaccacttggaacaaccatat |
42019320 |
T |
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| Q |
244 |
gatggtacttggtatcaaagtgcttgtt |
271 |
Q |
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| T |
42019319 |
gatggtacttggtatcaaagtgcttgtt |
42019292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 116 - 271
Target Start/End: Complemental strand, 1252661 - 1252502
Alignment:
| Q |
116 |
tgtattattttatgaataa-ggttcttccttctatgtactatgggtcat---tgagaatcaaatgcttccatttattgattgttgtgaccagttaagttg |
211 |
Q |
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| T |
1252661 |
tgtattattttatgaataaaggttcttccttctatgttctatgggtgataattgagaatcaaatgcttccatttattgattgttgtgaccagttaagttg |
1252562 |
T |
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| Q |
212 |
ctgcagtcttttaccacctggaacaaccatatgatggtacttggtatcaaagtgcttgtt |
271 |
Q |
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| T |
1252561 |
ctgcagtcttttaccacctggaacaaccatatgatggtacttggtatcaaagtgcttgtt |
1252502 |
T |
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