View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15837_high_4 (Length: 426)
Name: NF15837_high_4
Description: NF15837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15837_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 19 - 403
Target Start/End: Original strand, 47288473 - 47288847
Alignment:
| Q |
19 |
aagtgttgaagtaacaagatgcatccatgttgggttatgttgtgttcaagaagatccagatcaaagaccatcgatgcagtcagtagttttactgctaagt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
47288473 |
aagtgttgaagtaacaagatgcatccatgttgggttatgttgtgttcaagaagatccagatcaaagaccatcgatgcagacagtagttttactgctaagt |
47288572 |
T |
|
| Q |
119 |
agccattctgttactcttgaaccacctcaacgaccagcgggttatattagtagcaaaactgatcaaagctttgcaacaaaagattttgatagctcagaca |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47288573 |
agccattctgttactcttgaaccacctcaacgaccagcgggttatattagtagcaaaactgatcaaagctttgcaacaaaagattttgatagctcagaca |
47288672 |
T |
|
| Q |
219 |
agtctacatctaaaagccaatcggttgcagtttctgttgatgatgcatccatcactcaggtgtaccctcgatagtgcttctattcacacacataactcag |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |
|
|
| T |
47288673 |
agtctacatctaaaagccaatcggttgcagtttctgttgatgatgcatccatcactcaggtgtaccctcgatagtgcttctactcac----------tag |
47288762 |
T |
|
| Q |
319 |
gtgtaccatctatgcagtagctttggctgccccattctttttactcttatttgaataatttggcatatcttgtaattagctaccc |
403 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47288763 |
gtgtaccatctatgcagtagctttggctgccccattctttttactcttatttgaataatttggcatatcttgtaattagctaccc |
47288847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 334 - 410
Target Start/End: Original strand, 9932724 - 9932800
Alignment:
| Q |
334 |
agtagctttggctgccccattctttttactcttatttgaataatttggcatatcttgtaattagctaccccaataaa |
410 |
Q |
| |
|
||||||||||||| ||||||| |||| ||| | |||||||||| ||||||||| |||||||||| |||||||||||| |
|
|
| T |
9932724 |
agtagctttggctaccccatttttttcactttgatttgaataacttggcatattttgtaattagttaccccaataaa |
9932800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 330 - 376
Target Start/End: Complemental strand, 15664556 - 15664511
Alignment:
| Q |
330 |
atgcagtagctttggctgccccattctttttactcttatttgaataa |
376 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||| |||||||||||| |
|
|
| T |
15664556 |
atgcagtagctttggctaccccatt-tttttacttttatttgaataa |
15664511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University