View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15837_low_1 (Length: 565)
Name: NF15837_low_1
Description: NF15837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15837_low_1 |
 | |
|
| [»] scaffold0697 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 442; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 1 - 559
Target Start/End: Complemental strand, 52364977 - 52364427
Alignment:
| Q |
1 |
ttatattgttgaattaatgttagttaatgagacaataaagtgattgaaaactgtctaatactaacagcaattgcatcaccagtgtataaataatagagta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
52364977 |
ttatattgttgaattaatgttagttaatgagtcaataaagtgattgaaaactctctaatactaaatgcaattgcatcaccggtgtataaataatagagta |
52364878 |
T |
|
| Q |
101 |
cgtataagttcttgacccnnnnnnnnnnnnnnnnnngttacgtataagttgctttattgtctacatggactaggctccattttcgtaaagcatatgcata |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52364877 |
cgtataagttcttgacccaaaaaaaaaaa--------ttacgtataagttgctttattgtctacatggactaggctccattttcgtaaagcatatgcata |
52364786 |
T |
|
| Q |
201 |
aaaataataatgcagaaaggatcg-attgacatcatttacatgtggttacttgctgattgatttccttgaatgtttctttagtagaattttcttttccca |
299 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||| |
|
|
| T |
52364785 |
aaaataataatgcagaaaggatcggattgacatcatttacatgtggttacttgctgattgatttccttgaatgcttcttt-gtagaattttctttttcca |
52364687 |
T |
|
| Q |
300 |
gttcatgtttaattagttggttttctatttcttattaaacgggtaaaattggaattacatcattcatttccaggaacaaattttgcaatacaaacacatt |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
52364686 |
gttcatgtttaattagttggttttctatttcttattaaacgggtaaaattggaattacatcattcattttcaggaacaaattttgcaatacaaacacatt |
52364587 |
T |
|
| Q |
400 |
tcaattattcccagtttcttttttaataaaattcccaggaacaaaactatttaaccaaacacttttttcatattttcctaggaataaaaatcacaccttt |
499 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52364586 |
tcaattattcccagtttcttttttaataaaattcccaagaacaaaactatttaaccaaacacttttttcatattttcctaggaataaaaatcacaccttt |
52364487 |
T |
|
| Q |
500 |
atattccagggaaagatgattcctgggaataaattgtgtatccatgaaacaaacgcaccc |
559 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52364486 |
atattccagggaaagataattcctgggaataaattgtgtatccatgaaacaaacgcaccc |
52364427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 1 - 561
Target Start/End: Original strand, 42492208 - 42492761
Alignment:
| Q |
1 |
ttatattgttgaattaatgttagttaatgagacaataaagtgattgaaaactgtctaatactaacagcaattgcatcaccagtgtataaataatagagta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
42492208 |
ttatattgttgaattaatgttagttaatgagacaataaagtgattgaaaactctctaatactaaatgcaattgcatcactagtgtataaataatagagta |
42492307 |
T |
|
| Q |
101 |
cgtataagttcttgacccnnnnnnnnnnnnnnnnnngttacgtataagttgctttattgtctacatggactaggctccattttcgtaaagcatatgcata |
200 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42492308 |
cgtataagttcttgacccaaaaaaaaataa-------ttacgaataagttgctttattgtctacatggactaggctccattttcgtaaagcatatgcata |
42492400 |
T |
|
| Q |
201 |
aaaataataatgcagaaaggatcg-attgacatcatttacatgtggttacttgctgattgatttccttgaatgtttctttagtagaattttcttttccca |
299 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||| |
|
|
| T |
42492401 |
aaaataataatgcagaaaggatcgtattgacatcatttacatgtggttacttgctgattgatttccttgaatgtttcttt-gtagaattttcttattcca |
42492499 |
T |
|
| Q |
300 |
gttcatgtttaattagttggttttctatttcttattaaacgggtaaaattggaattacatcattcatttccaggaacaaattttgcaatacaaacacatt |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
42492500 |
gttcatgtttaattagttggttttctatttcttattaaacgggtaaaattggaattacatcattcattcccaggaacaagttttgcaatacaaacacatt |
42492599 |
T |
|
| Q |
400 |
tcaattattcccagtttcttttttaataaaattcccaggaacaaaactatttaaccaaacacttttttcatattttcctaggaataaaaatcacaccttt |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42492600 |
tcaattattcccagtttcttttttaataaaattcccaggaacaaaactatttaaccaaacacttttttcatattttcctaggaataaaaatcacaccttt |
42492699 |
T |
|
| Q |
500 |
atattccagggaaagatgattcctgggaataaattgtgtatccatgaaacaaacgcacccta |
561 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
42492700 |
atattccagggaaagataattcctgagaataaattgtgtatccatgaaacaaacgcacccta |
42492761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 432; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 1 - 561
Target Start/End: Original strand, 39345510 - 39346065
Alignment:
| Q |
1 |
ttatattgttgaattaatgttagttaatgagacaataaagtgattgaaaactgtctaatactaacagcaattgcatcaccagtgtataaataatagagta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
39345510 |
ttatattgttgaattaatgttagttaatgagtcaataaagtgattgaaaactctctaatactaaatgcaattgcatcaccagtgtataaataatagagta |
39345609 |
T |
|
| Q |
101 |
cgtataagttcttgacccnnnnnnnnnnnnnnnnnngttacgtataagttgctttattgtctacatggactaggctccattttcgtaaagcatatgcata |
200 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
39345610 |
cgtataagttcttgacccaaaaaaaaaaaaaa-----ttacgtataagttgctttattgtctacatggactagactccattttcgtaaagcatatgcata |
39345704 |
T |
|
| Q |
201 |
aaaataataatgcagaaaggatcg-attgacatcatttacatgtggttacttgctgattgatttccttgaatgtttctttagtagaattttcttttccca |
299 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||| |
|
|
| T |
39345705 |
aaaataacaatgcagaaaggatcggattgacatcatttacatgtggttacttgctgattgatttccttgaatgcttcttt-gtagaattttctttttcca |
39345803 |
T |
|
| Q |
300 |
gttcatgtttaattagttggttttctatttcttattaaacgggtaaaattggaattacatcattcatttccaggaacaaattttgcaatacaaacacatt |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
39345804 |
gttcatgtttaattagttggttttctatttcttattaaacgggtaaaattggaattacatcattcattttcaggaacaaattttgcaatacaaacacatt |
39345903 |
T |
|
| Q |
400 |
tcaattattcccagtttcttttttaataaaattcccaggaacaaaactatttaaccaaacacttttttcatattttcctaggaataaaaatcacaccttt |
499 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39345904 |
tcaattattctcagtttcttttttaataaaattcccaggaacaaaactatttaaccaaacacttttttcatattttcctaggaataaaaatcacaccttt |
39346003 |
T |
|
| Q |
500 |
atattccagggaaagatgattcctgggaataaattgtgtatccatgaaacaaacgcacccta |
561 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39346004 |
atattccagaaaaagataattcctgggaataaattgtgtatccatgaaacaaacgcacccta |
39346065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 450 - 560
Target Start/End: Original strand, 22908135 - 22908246
Alignment:
| Q |
450 |
ttaaccaaacacttttttc-atattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatccatgaaa |
548 |
Q |
| |
|
|||| |||||||||||||| |||||||||| ||||||||| | ||||| | ||||| |||||| |||| |||||||||||||| |||| || | ||| |
|
|
| T |
22908135 |
ttaatcaaacacttttttctatattttcctgggaataaaattttaaccttcacattcctaggaaagttgatacctgggaataaattttgtaaccctcaaa |
22908234 |
T |
|
| Q |
549 |
caaacgcaccct |
560 |
Q |
| |
|
||||||| |||| |
|
|
| T |
22908235 |
caaacgccccct |
22908246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 451 - 561
Target Start/End: Complemental strand, 6911316 - 6911207
Alignment:
| Q |
451 |
taaccaaacacttttttcatattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatccatgaaaca |
550 |
Q |
| |
|
|||||||||| ||||||||| ||||| ||||||||| || || |||||||||||| |||| | | |||||| |||||||||| ||| | ||||||| |
|
|
| T |
6911316 |
taaccaaacatatttttcataaattccttggaataaaattcccatctttatattccaaggaatg-ttattcctaggaataaatttggtaaacttgaaaca |
6911218 |
T |
|
| Q |
551 |
aacgcacccta |
561 |
Q |
| |
|
||| ||||||| |
|
|
| T |
6911217 |
aacacacccta |
6911207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 450 - 555
Target Start/End: Complemental strand, 21529859 - 21529753
Alignment:
| Q |
450 |
ttaaccaaacacttttttc-atattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatccatgaaa |
548 |
Q |
| |
|
||||||||||||||||||| ||||||| || ||||||||| | ||||| | ||||| ||||||| |||| |||| ||||| ||| |||| || | ||| |
|
|
| T |
21529859 |
ttaaccaaacacttttttctatatttttctgggaataaaattttaaccttcacattcctgggaaagttgatacctgagaatagattttgtaaccctcaaa |
21529760 |
T |
|
| Q |
549 |
caaacgc |
555 |
Q |
| |
|
||||||| |
|
|
| T |
21529759 |
caaacgc |
21529753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 428; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 1 - 561
Target Start/End: Complemental strand, 9935969 - 9935417
Alignment:
| Q |
1 |
ttatattgttgaattaatgttagttaatgagacaataaagtgattgaaaactgtctaatactaacagcaattgcatcaccagtgtataaataatagagta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
9935969 |
ttatattgttgaattaatgttagttaatgagacaataaagtgattgaaaactctctaatactaaatgcaattgcatcactagtgtataaataatagagta |
9935870 |
T |
|
| Q |
101 |
cgtataagttcttgacccnnnnnnnnnnnnnnnnnngttacgtataagttgctttattgtctacatggactaggctccattttcgtaaagcatatgcata |
200 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9935869 |
cgtataagttcttgacccaaaaaaaaaaa--------ttacgaataagttgctttattgtctacatggactaggctccattttcgtaaagcatatgcata |
9935778 |
T |
|
| Q |
201 |
aaaataataatgcagaaaggatcg-attgacatcatttacatgtggttacttgctgattgatttccttgaatgtttctttagtagaattttcttttccca |
299 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||| |
|
|
| T |
9935777 |
aaaataataatgcagaaaggatcgtattgacatcatttacatgtggttacttgctgattgatttccttgaatgtttcttt-gtagaattttcttattcca |
9935679 |
T |
|
| Q |
300 |
gttcatgtttaattagttggttttctatttcttattaaacgggtaaaattggaattacatcattcatttccaggaacaaattttgcaatacaaacacatt |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
9935678 |
gttcatgtttaattagttggttttctatttcttattaaacgggtaaaattggaattacatcattcattcccaggaacaagttttgcaatacaaacacatt |
9935579 |
T |
|
| Q |
400 |
tcaattattcccagtttcttttttaataaaattcccaggaacaaaactatttaaccaaacacttttttcatattttcctaggaataaaaatcacaccttt |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
9935578 |
tcaattattcccagtttcttttttaataaaattcccaggaacaaaactatttaaccaaacacttttttcatattttcctaagaataaaaatcacaccttt |
9935479 |
T |
|
| Q |
500 |
atattccagggaaagatgattcctgggaataaattgtgtatccatgaaacaaacgcacccta |
561 |
Q |
| |
|
||||| ||||||||||| |||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
9935478 |
atatttcagggaaagataattcctaggaataaattgtgtatccataaaacaaacgcacccta |
9935417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 1 - 561
Target Start/End: Original strand, 6696316 - 6696865
Alignment:
| Q |
1 |
ttatattgttgaattaatgttagttaatgagacaataaagtgattgaaaactgtctaatactaacagcaattgcatcaccagtgtataaataatagagta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| | |||||||||||||||||| |
|
|
| T |
6696316 |
ttatattgttgaattaatgttagttaatgagacaataaagtgattgaaaactctctaatactaaatgcaattgcatcactactgtataaataatagagta |
6696415 |
T |
|
| Q |
101 |
cgtataagttcttgacccnnnnnnnnnnnnnnnnnngttacgtataagttgctttattgtctacatggactaggctccattttcgtaaagcatatgcata |
200 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6696416 |
cgtataagttcttgacccaaaaaaaaaaa--------ttacgaataagttgttttattgtctacatggactaggctccattttcgtaaagcatatgcata |
6696507 |
T |
|
| Q |
201 |
aaaataataatgcagaaaggatcg-attgacatcatttacatgtggttacttgctgattgatttccttgaatgtttctttagtagaattttcttttccca |
299 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||| |
|
|
| T |
6696508 |
aaaataataatgcagaaaggatcgtattgacatcatttacatgtggttacttgctgattgatttccttgaatgtttcttt-gtagaattttcttattcca |
6696606 |
T |
|
| Q |
300 |
gttcatgtttaattagttggttttctatttcttattaaacgggtaaaattggaattacatcattcatttccaggaacaaattttgcaatacaaacacatt |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
6696607 |
gttcatgtttaattagttggttttctatttcttattaaacgggta---ttggaattacatcattcattcccaggaacaagttttgcaatacaaacacatt |
6696703 |
T |
|
| Q |
400 |
tcaattattcccagtttcttttttaataaaattcccaggaacaaaactatttaaccaaacacttttttcatattttcctaggaataaaaatcacaccttt |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6696704 |
tcaattattcccagtttcttttttaataaaattcccaggaacaaaactatttaaccaaacacttttttcatattttcctaggaataaaaatcacaccttt |
6696803 |
T |
|
| Q |
500 |
atattccagggaaagatgattcctgggaataaattgtgtatccatgaaacaaacgcacccta |
561 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6696804 |
atattccagggaaagataattcctaggaataaattgtgtatccatgaaacaaacgcacccta |
6696865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 450 - 539
Target Start/End: Complemental strand, 5665800 - 5665710
Alignment:
| Q |
450 |
ttaaccaaacacttttttca-tattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgta |
539 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||||||| | |||||| ||||| ||| ||| | ||||||||||||||||| |||| |
|
|
| T |
5665800 |
ttaaccaaacacttttttctgtattttcctgggaataaaaatttcccctttacattcctgggtaagttaattcctgggaataaattttgta |
5665710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 132; Significance: 3e-68; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 348 - 487
Target Start/End: Complemental strand, 9973118 - 9972979
Alignment:
| Q |
348 |
ttggaattacatcattcatttccaggaacaaattttgcaatacaaacacatttcaattattcccagtttcttttttaataaaattcccaggaacaaaact |
447 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9973118 |
ttggaattacatcattcatctccaggaacaaattttgcaatacaaacacatttcaattattcccagtttcttttttaataaaattcccaggaacaaaact |
9973019 |
T |
|
| Q |
448 |
atttaaccaaacacttttttcatattttcctaggaataaa |
487 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
9973018 |
atttaaccaaacacttttttcatatttttctaggaataaa |
9972979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 450 - 553
Target Start/End: Complemental strand, 13323927 - 13323823
Alignment:
| Q |
450 |
ttaaccaaacacttttttca-tattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatccatgaaa |
548 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| | |||||| ||||| ||| ||| | ||||||||||||||||| |||| || | ||| |
|
|
| T |
13323927 |
ttaaccaaacacttttttctgtattttcctaggaataaaaatttcccctttacattcctgggtaagttaattcctgggaataaattttgtaaccctcaaa |
13323828 |
T |
|
| Q |
549 |
caaac |
553 |
Q |
| |
|
||||| |
|
|
| T |
13323827 |
caaac |
13323823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 525 - 561
Target Start/End: Complemental strand, 9972986 - 9972950
Alignment:
| Q |
525 |
ggaataaattgtgtatccatgaaacaaacgcacccta |
561 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9972986 |
ggaataaattgtgtatccatgaaacaaacgcacccta |
9972950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 560
Target Start/End: Complemental strand, 33378664 - 33378556
Alignment:
| Q |
451 |
taaccaaacacttttttcatattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatccatgaaaca |
550 |
Q |
| |
|
|||||||||| ||||||||| ||||| ||||||||| || || |||||||||||| |||| | | |||||| |||||||||| ||| | ||||||| |
|
|
| T |
33378664 |
taaccaaacatatttttcataaattccttggaataaaattcccatctttatattccaaggaatg-ttattcctaggaataaatttggtaaacttgaaaca |
33378566 |
T |
|
| Q |
551 |
aacgcaccct |
560 |
Q |
| |
|
||| |||||| |
|
|
| T |
33378565 |
aacacaccct |
33378556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 451 - 559
Target Start/End: Original strand, 27214096 - 27214203
Alignment:
| Q |
451 |
taaccaaacacttttttcatattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatccatgaaaca |
550 |
Q |
| |
|
|||||||||| ||||||||| ||||| ||||||||| || || |||||||||||| |||| | | |||||| |||||||||| ||| | ||||||| |
|
|
| T |
27214096 |
taaccaaacatatttttcataaattccttggaataaaattcccatctttatattccaaggaatg-ttattcctaggaataaatttggtaaacttgaaaca |
27214194 |
T |
|
| Q |
551 |
aacgcaccc |
559 |
Q |
| |
|
||| ||||| |
|
|
| T |
27214195 |
aacacaccc |
27214203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 451 - 559
Target Start/End: Original strand, 48160814 - 48160921
Alignment:
| Q |
451 |
taaccaaacacttttttcatattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatccatgaaaca |
550 |
Q |
| |
|
|||||||||| ||||||||| ||||| ||||||||| || || |||||||||||| |||| | | |||||| |||||||||| ||| | ||||||| |
|
|
| T |
48160814 |
taaccaaacatatttttcataaattccttggaataaaattcccatctttatattccaaggaatg-ttattcctaggaataaatttagtaaacttgaaaca |
48160912 |
T |
|
| Q |
551 |
aacgcaccc |
559 |
Q |
| |
|
||| ||||| |
|
|
| T |
48160913 |
aacacaccc |
48160921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 101; Significance: 9e-50; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 138 - 339
Target Start/End: Complemental strand, 21936034 - 21935843
Alignment:
| Q |
138 |
ttacgtataagttgctttattgtctacatggactaggctccattttcgtaaagcatatgcataaaaataataatgcagaaaggatc-------gattgac |
230 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
21936034 |
ttacgtttaagttgctttattgtctacatgaactacgctccattttcgtaaagcatatgcataaaaataataatgcagaaaggatcggattcggattgac |
21935935 |
T |
|
| Q |
231 |
atcatttacatgtggttacttgctgattgatttccttgaatgtttctttagtagaattttcttttcccagttcatgtttaattagttggttttctatttc |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||| |||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
21935934 |
atcatttacatgtggttacttgctgattgatttc--tgaatgtttct--------------ttttccga-ttcatgtttaattagttggttttctatttc |
21935852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 430 - 538
Target Start/End: Complemental strand, 21935811 - 21935703
Alignment:
| Q |
430 |
attcccaggaacaaaactatttaaccaaacacttttttcatattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaat |
529 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||| ||||||| |||| |
|
|
| T |
21935811 |
attcccaggaacaaaactatttaaccaaacacttttttcatatttttctagaaataaaaatcacacctttatatttcagggaaagataattcctgagaat |
21935712 |
T |
|
| Q |
530 |
aaattgtgt |
538 |
Q |
| |
|
||||||||| |
|
|
| T |
21935711 |
aaattgtgt |
21935703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 21936432 - 21936339
Alignment:
| Q |
1 |
ttatattgttgaattaatgttagttaatgagacaataaagtgattgaaaactgtctaatactaacagcaattgcatcaccagtgtataaataat |
94 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
21936432 |
ttatattgttgaattatggttagttaatgagacaataaagtgattgaaaactctctaatactaaatgcaattgcatcaccagtatataaataat |
21936339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 375 - 413
Target Start/End: Complemental strand, 21935842 - 21935804
Alignment:
| Q |
375 |
acaaattttgcaatacaaacacatttcaattattcccag |
413 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
21935842 |
acaaattttgcaatccaaacacatttcaattattcccag |
21935804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 118
Target Start/End: Complemental strand, 21936080 - 21936048
Alignment:
| Q |
86 |
ataaataatagagtacgtataagttcttgaccc |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
21936080 |
ataaataatagagtacgtataagttcttgaccc |
21936048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 450 - 560
Target Start/End: Original strand, 10644178 - 10644289
Alignment:
| Q |
450 |
ttaaccaaacacttttttc-atattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatccatgaaa |
548 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||||||| | ||||| ||||||| || |||| |||| |||||||||| ||| |||| || | ||| |
|
|
| T |
10644178 |
ttaaccaaacacttttttctatattttcctgggaataaaattttaaccttcatattcctggaaaagttgatacctgggaatagattttgtaaccctcaaa |
10644277 |
T |
|
| Q |
549 |
caaacgcaccct |
560 |
Q |
| |
|
||||||| |||| |
|
|
| T |
10644278 |
caaacgccccct |
10644289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 450 - 555
Target Start/End: Complemental strand, 17507015 - 17506909
Alignment:
| Q |
450 |
ttaaccaaacacttttttc-atattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatccatgaaa |
548 |
Q |
| |
|
||||||||||||||||||| ||||||| || ||||||||| | ||||| | ||||| ||||||| |||| |||||||||| ||| |||| || | ||| |
|
|
| T |
17507015 |
ttaaccaaacacttttttctatatttttctgggaataaaattttaaccttcacattcctgggaaagttgatacctgggaatagattttgtaaccctcaaa |
17506916 |
T |
|
| Q |
549 |
caaacgc |
555 |
Q |
| |
|
||||||| |
|
|
| T |
17506915 |
caaacgc |
17506909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 451 - 561
Target Start/End: Original strand, 32661175 - 32661284
Alignment:
| Q |
451 |
taaccaaacacttttttcatattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatccatgaaaca |
550 |
Q |
| |
|
|||||||||| ||||||||| ||||| ||||||||| || || |||||||||||| |||| | | |||||| |||||||||| ||| | ||||||| |
|
|
| T |
32661175 |
taaccaaacatatttttcataaattccttggaataaaattcccatctttatattccaaggaatg-ttattcctaggaataaatttagtaaacttgaaaca |
32661273 |
T |
|
| Q |
551 |
aacgcacccta |
561 |
Q |
| |
|
||| ||||||| |
|
|
| T |
32661274 |
aacacacccta |
32661284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 450 - 555
Target Start/End: Original strand, 21506151 - 21506257
Alignment:
| Q |
450 |
ttaaccaaacacttttttc-atattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatccatgaaa |
548 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| | ||||| | ||||| || |||| |||| ||||||||| ||| |||| || | ||| |
|
|
| T |
21506151 |
ttaaccaaacacttttttctatattttcctaggaataaaattttaaccttcacattcctggaaaagttgatacctgggaatcgattttgtaaccctcaaa |
21506250 |
T |
|
| Q |
549 |
caaacgc |
555 |
Q |
| |
|
||||||| |
|
|
| T |
21506251 |
caaacgc |
21506257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0697 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0697
Description:
Target: scaffold0697; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 555
Target Start/End: Complemental strand, 815 - 710
Alignment:
| Q |
450 |
ttaaccaaacacttttttcatattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatccatgaaac |
549 |
Q |
| |
|
||||||||||||||||| ||||||| || ||||||||| | ||||| | ||||| ||||||| |||| |||| ||||| ||| |||| || | |||| |
|
|
| T |
815 |
ttaaccaaacactttttctatatttttctgggaataaaattttaaccttcacattcctgggaaagttgatacctgagaatagattttgtaaccctcaaac |
716 |
T |
|
| Q |
550 |
aaacgc |
555 |
Q |
| |
|
|||||| |
|
|
| T |
715 |
aaacgc |
710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 514
Target Start/End: Original strand, 27426914 - 27426979
Alignment:
| Q |
450 |
ttaaccaaacacttttttc-atattttcctaggaataaaaatcacacctttatattccagggaaag |
514 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||||||| | ||||| | ||||||||||||| |
|
|
| T |
27426914 |
ttaaccaaacacttttttctatattttcctcggaataaaattttaaccttcacattccagggaaag |
27426979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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