View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15837_low_12 (Length: 299)
Name: NF15837_low_12
Description: NF15837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15837_low_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 34 - 283
Target Start/End: Original strand, 5326524 - 5326774
Alignment:
| Q |
34 |
agctttgcaactacaattcaaagattgacaatgaatgcgcaaaaatgttcctagtgtgtgagaaggaaatacaattacttttttgagaccattgagaaaa |
133 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
5326524 |
agctttgaaactacaattcaaagattgacaatgaatgcgcaaaaatgttcccagtgtgtgagaaggaaatacaattacttttctgagaccattgagaaaa |
5326623 |
T |
|
| Q |
134 |
ttaattagagttaactaaaattcctaattaccgtaaaattaagtatttgtgtttacaaagttaactaaaattcttaattactgtaaaattaagtattttg |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
5326624 |
ttaattagagttaactaaaattcctaattaccgtaaaattaagtatttgtgtttacaaagttaactaaaattcttaatta-tgtaaaattaagtattttt |
5326722 |
T |
|
| Q |
234 |
gtttataatagag--tagagagagtaatttacaattggtagtttaaaaaatc |
283 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5326723 |
gtttataatagagattagagagagtaatttacaattggtagtttaaaaaatc |
5326774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 246
Target Start/End: Original strand, 15015179 - 15015219
Alignment:
| Q |
206 |
cttaattactgtaaaattaagtattttggtttataatagag |
246 |
Q |
| |
|
||||||||||||| ||||| |||||||| |||||||||||| |
|
|
| T |
15015179 |
cttaattactgtataattaggtattttgatttataatagag |
15015219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University