View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15837_low_16 (Length: 227)
Name: NF15837_low_16
Description: NF15837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15837_low_16 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 13308129 - 13308371
Alignment:
| Q |
1 |
cttttcgttctcctttattctagtcgcaaccatgactagaagaaaggtgaaacttgccttcattgtcaatgacgctgcaag----------------aaa |
84 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
13308129 |
cttttcgttctcctttattctagtcgcaaccatgactagaagaaaggtgaaacttgccttcattgtcaatgacgctgcaagaaaagtaacatacaagaaa |
13308228 |
T |
|
| Q |
85 |
aggatgaagggtttattgaagaagattgacgaactaagcacgctttgtggaattgaagcttgtgctatagtttacggtccttatgaaccacaacctgaga |
184 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13308229 |
aggatgaagggtttattgaagaagattgacgaactaagcacgctttgtggaattgaagcttgtgctatagtttacggtccttatgaaccacaacctgaga |
13308328 |
T |
|
| Q |
185 |
tttggccatccccttggggagtccaaaatgtgctcttaaaatt |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
13308329 |
tttggccatccccttggggagtccaaaatgtgctctcaaaatt |
13308371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 6e-27; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 82 - 194
Target Start/End: Original strand, 18949760 - 18949873
Alignment:
| Q |
82 |
aaaaggatgaagggtttattgaagaa-gattgacgaactaagcacgctttgtggaattgaagcttgtgctatagtttacggtccttatgaaccacaacct |
180 |
Q |
| |
|
||||||| |||| |||||||||| || | |||| ||||||||||| ||||||||||||||||||||||||||| | || || |||||||||||||||| | |
|
|
| T |
18949760 |
aaaaggaagaagagtttattgaataaagtttgatgaactaagcaccctttgtggaattgaagcttgtgctataatgtatggcccttatgaaccacaactt |
18949859 |
T |
|
| Q |
181 |
gagatttggccatc |
194 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
18949860 |
gagatttggccatc |
18949873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 82 - 194
Target Start/End: Original strand, 19004084 - 19004197
Alignment:
| Q |
82 |
aaaaggatgaagggtttattgaagaa-gattgacgaactaagcacgctttgtggaattgaagcttgtgctatagtttacggtccttatgaaccacaacct |
180 |
Q |
| |
|
||||||| |||| |||||||||| || | |||| ||||||||||| ||||||||||||||||||||||||||| | || || |||||||||||||||| | |
|
|
| T |
19004084 |
aaaaggaagaagagtttattgaataaagtttgatgaactaagcaccctttgtggaattgaagcttgtgctataatgtatggcccttatgaaccacaactt |
19004183 |
T |
|
| Q |
181 |
gagatttggccatc |
194 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
19004184 |
gagatttggccatc |
19004197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 187
Target Start/End: Complemental strand, 18950432 - 18950323
Alignment:
| Q |
78 |
caagaaaaggatgaagggtttattgaagaagattgacgaactaagcacgctttgtggaattgaagcttgtgctatagtttacggtccttatgaaccacaa |
177 |
Q |
| |
|
|||||||| || ||||||| | ||||| ||| |||| |||||||||| |||||| ||||||||| | | ||||||||||| | | |||||||||| || |
|
|
| T |
18950432 |
caagaaaacgaagaagggtatgttgaataaggttgaagaactaagcatcctttgtagaattgaagttagagctatagtttaggaccattatgaaccataa |
18950333 |
T |
|
| Q |
178 |
cctgagattt |
187 |
Q |
| |
|
||| |||||| |
|
|
| T |
18950332 |
ccttagattt |
18950323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 158
Target Start/End: Original strand, 15868208 - 15868288
Alignment:
| Q |
78 |
caagaaaaggatgaagggtttattgaagaagattgacgaactaagcacgctttgtggaattgaagcttgtgctatagttta |
158 |
Q |
| |
|
||||||||||| ||| | | ||||||||||| || | ||| ||||||| ||||| | |||||||||||||| ||||||||| |
|
|
| T |
15868208 |
caagaaaaggaagaacgatatattgaagaaggttaatgaaataagcaccctttgcgaaattgaagcttgtgatatagttta |
15868288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 18949673 - 18949717
Alignment:
| Q |
11 |
tcctttattctagtcgcaaccatgactagaagaaaggtgaaactt |
55 |
Q |
| |
|
||||||||||||||| ||| ||||||||||| ||||||||||||| |
|
|
| T |
18949673 |
tcctttattctagtcacaatcatgactagaaaaaaggtgaaactt |
18949717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 19003997 - 19004041
Alignment:
| Q |
11 |
tcctttattctagtcgcaaccatgactagaagaaaggtgaaactt |
55 |
Q |
| |
|
||||||||||||||| ||| ||||||||||| ||||||||||||| |
|
|
| T |
19003997 |
tcctttattctagtcacaatcatgactagaaaaaaggtgaaactt |
19004041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 194
Target Start/End: Complemental strand, 15868077 - 15867962
Alignment:
| Q |
79 |
aagaaaaggatgaagggtttattgaagaagattgacgaactaagcacgctttgtggaattgaagcttgtgctatagtttacggtccttatgaaccacaac |
178 |
Q |
| |
|
|||||||||| |||||| ||||||||| | || | ||| |||| | |||||||||||||| | |||| |||||| ||| || ||||||||| | ||| |
|
|
| T |
15868077 |
aagaaaaggaataagggtctattgaagagggttaatgaaataagaaacctttgtggaattgatgtttgtactataggttatggaacttatgaactataac |
15867978 |
T |
|
| Q |
179 |
ctgagatttggccatc |
194 |
Q |
| |
|
||||||||| |||||| |
|
|
| T |
15867977 |
ctgagatttagccatc |
15867962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 187
Target Start/End: Complemental strand, 19004756 - 19004647
Alignment:
| Q |
78 |
caagaaaaggatgaagggtttattgaagaagattgacgaactaagcacgctttgtggaattgaagcttgtgctatagtttacggtccttatgaaccacaa |
177 |
Q |
| |
|
|||||||| || ||||||| | |||| ||| |||| |||||||||| |||||| ||||||||| | | ||||||||||| | | |||||||||| || |
|
|
| T |
19004756 |
caagaaaacgaagaagggtctgctgaataaggttgaagaactaagcatcctttgtagaattgaagttagagctatagtttaggaccattatgaaccataa |
19004657 |
T |
|
| Q |
178 |
cctgagattt |
187 |
Q |
| |
|
||| |||||| |
|
|
| T |
19004656 |
ccttagattt |
19004647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 18976245 - 18976289
Alignment:
| Q |
11 |
tcctttattctagtcgcaaccatgactagaagaaaggtgaaactt |
55 |
Q |
| |
|
|||||||||||||| ||| ||||||||||| ||||||||||||| |
|
|
| T |
18976245 |
tcctttattctagtaacaatcatgactagaaaaaaggtgaaactt |
18976289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 96 - 227
Target Start/End: Original strand, 15072945 - 15073076
Alignment:
| Q |
96 |
tttattgaagaagattgacgaactaagcacgctttgtggaattgaagcttgtgctatagtttacggtccttatgaaccacaacctgagatttggccatcc |
195 |
Q |
| |
|
||||||||||||| | || |||||||||||||||||||| |||||||| |||||||||||| | |||||| ||||||| |||||| | ||||||||||| |
|
|
| T |
15072945 |
tttattgaagaaggtcgatgaactaagcacgctttgtggtattgaagcatgtgctatagttcaaggtcctcatgaacctcaacctcatatttggccatca |
15073044 |
T |
|
| Q |
196 |
ccttggggagtccaaaatgtgctcttaaaatt |
227 |
Q |
| |
|
| |||||||| || | ||||||| |||||| |
|
|
| T |
15073045 |
tcatggggagttcatagggtgctctcaaaatt |
15073076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 10986743 - 10986811
Alignment:
| Q |
18 |
ttctagtcgcaaccatgactagaagaaaggtgaaacttgccttcattgtcaatgacgctgcaagaaaag |
86 |
Q |
| |
|
|||| ||| ||||||||||||||||||| || ||||||||||||||||| ||||| |||||||| |||| |
|
|
| T |
10986743 |
ttcttgtcacaaccatgactagaagaaaagttaaacttgccttcattgtgaatgatgctgcaaggaaag |
10986811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 78 - 194
Target Start/End: Original strand, 10986819 - 10986935
Alignment:
| Q |
78 |
caagaaaaggatgaagggtttattgaagaagattgacgaactaagcacgctttgtggaattgaagcttgtgctatagtttacggtccttatgaaccacaa |
177 |
Q |
| |
|
||||||||| | ||||||| ||||||| ||| ||| ||||| ||||| ||||||||||| || || ||||| || ||||| || |||||||| | ||| |
|
|
| T |
10986819 |
caagaaaagaaagaagggtctattgaaaaaggttgctgaacttagcaccctttgtggaatcgatgcatgtgccatggtttatggcccttatgagcttcaa |
10986918 |
T |
|
| Q |
178 |
cctgagatttggccatc |
194 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
10986919 |
cctgagatttggccatc |
10986935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 225
Target Start/End: Complemental strand, 9895279 - 9895144
Alignment:
| Q |
90 |
gaagggtttattgaagaagattgacgaactaagcacgctttgtggaattgaagcttgtgctatagtttacggtccttatgaaccacaacctgagatttgg |
189 |
Q |
| |
|
|||||||||||| |||||| || | ||||||||||| || |||||| ||||||||||||| || || || || || ||||| || ||||| |||| ||| |
|
|
| T |
9895279 |
gaagggtttattcaagaaggtttatgaactaagcactctatgtggagttgaagcttgtgccattgtctatggaccatatgagcctcaaccgaagatctgg |
9895180 |
T |
|
| Q |
190 |
ccatccccttggggagtccaaaatgtgctcttaaaa |
225 |
Q |
| |
|
||||| || ||||||||||| ||||||| |||| |
|
|
| T |
9895179 |
ccatcaccacagggagtccaaacagtgctctcaaaa |
9895144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 194
Target Start/End: Original strand, 11095834 - 11095950
Alignment:
| Q |
78 |
caagaaaaggatgaagggtttattgaagaagattgacgaactaagcacgctttgtggaattgaagcttgtgctatagtttacggtccttatgaaccacaa |
177 |
Q |
| |
|
||||||||||| |||| || | || || ||| ||| ||||| ||||| || ||||| ||||| |||||||| ||||| || || |||||||| || || |
|
|
| T |
11095834 |
caagaaaaggaagaagagtctgttcaaaaaggttgttgaacttagcaccctctgtggtattgaggcttgtgccatagtgtatggcccttatgagcctcat |
11095933 |
T |
|
| Q |
178 |
cctgagatttggccatc |
194 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
11095934 |
cctgagatttggccatc |
11095950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 194
Target Start/End: Original strand, 11106530 - 11106645
Alignment:
| Q |
79 |
aagaaaaggatgaagggtttattgaagaagattgacgaactaagcacgctttgtggaattgaagcttgtgctatagtttacggtccttatgaaccacaac |
178 |
Q |
| |
|
|||||||||| |||| || |||| || ||| ||| ||||| ||||| || ||||| ||||| |||||||| ||| | || || |||||||| || || | |
|
|
| T |
11106530 |
aagaaaaggaagaagagtctattcaaaaaggttgttgaacttagcaccctctgtggtattgaggcttgtgccatattgtatggcccttatgagcctcatc |
11106629 |
T |
|
| Q |
179 |
ctgagatttggccatc |
194 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
11106630 |
ctgagatttggccatc |
11106645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 11095758 - 11095826
Alignment:
| Q |
18 |
ttctagtcgcaaccatgactagaagaaaggtgaaacttgccttcattgtcaatgacgctgcaagaaaag |
86 |
Q |
| |
|
|||| ||| |||||||| ||||| ||||| |||||||||||||||||||| || |||||||| |||| |
|
|
| T |
11095758 |
ttcttgtcacaaccatggttagaactaaggttaaacttgccttcattgtcaacgatgctgcaaggaaag |
11095826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 78
Target Start/End: Original strand, 11099911 - 11099951
Alignment:
| Q |
38 |
agaagaaaggtgaaacttgccttcattgtcaatgacgctgc |
78 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
11099911 |
agaagtaaggttaaacttgccttcattgtcaatgatgctgc |
11099951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 211
Target Start/End: Complemental strand, 29358316 - 29358183
Alignment:
| Q |
78 |
caagaaaaggatgaagggtttattgaagaagattgacgaactaagcacgctttgtggaattgaagcttgtgctatagtttacggtccttatgaaccacaa |
177 |
Q |
| |
|
||||||||||| ||| ||| || |||| ||| || ||||| ||||| || ||||| ||||| |||||||||||| | || |||| || || || ||| |
|
|
| T |
29358316 |
caagaaaaggaagaaaggtctaatgaaaaaggttagtgaactcagcaccctctgtggtattgatgcttgtgctataatctatagtccatacgatcctcaa |
29358217 |
T |
|
| Q |
178 |
cctgagatttggccatccccttggggagtccaaa |
211 |
Q |
| |
|
|||||| |||||||||| |||| |||||||||| |
|
|
| T |
29358216 |
cctgaggtttggccatctcctttaggagtccaaa |
29358183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University