View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15837_low_2 (Length: 509)
Name: NF15837_low_2
Description: NF15837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15837_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 493
Target Start/End: Complemental strand, 20361816 - 20361345
Alignment:
| Q |
1 |
ttcctttctgtgttgcttgaaaagtaatgtaatacaccctaccagcagttaaatcagtagcagcaggatgggtacacttgacaacattatgaaacacaaa |
100 |
Q |
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||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20361816 |
ttcctttatctgttgcttgaaaagtaatgtaatacaccctaccagcagttaaatcagtagcagcaggatgggtacacttgacaacattatgaaacacaaa |
20361717 |
T |
|
| Q |
101 |
agttggagcctaattaaataagtaaaagaagaattagtttagttaatgaacnnnnnnncaaacatactacaatacaatattattattaccaacctgctta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
20361716 |
agttggagcctaattaaataagtaaaagaagaattagtttagttaatgaacaaaaaaacaaacatactacaatacaatattattattaccaacctgctta |
20361617 |
T |
|
| Q |
201 |
ttcaaagcaacgttgcagagtttttcgagagtagggagcacatcttcatctaaatcgaggggtacaataccgccagatatatcgcaatcaagtggagggc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20361616 |
ttcaaagcaacgttgcagagtttttcgagagtagggagcacatcttcatctaaatcgaggggtacaataccgccagatatatcgcaatcaagtggagggg |
20361517 |
T |
|
| Q |
301 |
agatagcatcgtaaacctggtttgtgttgtccagaatcaatcatcaaaattaattaagagattgtttataagtgaaacaaacaacatgaaattgaaattg |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
20361516 |
agatagcatcgtaaacctggtttgtgttgtccagaatca---atcaaaattaattaagagattgtttataggtgaaacaaacaaca-------------- |
20361434 |
T |
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| Q |
401 |
aaattgaaattgatagatgcctacacttagaccgctacagagctcattatactcacgaactttagtctcacgatccaaccaagccttgttcat |
493 |
Q |
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| T |
20361433 |
----tgaaattgatagatgcctacacttagaccgctacagagctcattatactcacgaactttagtctcacgatccaaccaagccttgttcat |
20361345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 399 - 491
Target Start/End: Complemental strand, 32194658 - 32194566
Alignment:
| Q |
399 |
tgaaattgaaattgatagatgcctacacttagaccgctacagagctcattatactcacgaactttagtctcacgatccaaccaagccttgttc |
491 |
Q |
| |
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|||||||||| |||||||||||||||||||||| | | | |||||||||||||||||| |||||||| ||||| ||||||||||||||||||| |
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| T |
32194658 |
tgaaattgaagttgatagatgcctacacttagatcacgagagagctcattatactcaccaactttagcctcaccatccaaccaagccttgttc |
32194566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 13 - 150
Target Start/End: Complemental strand, 21549606 - 21549459
Alignment:
| Q |
13 |
ttgcttgaaaagtaatgtaatacaccctaccagcagttaaatcagtagcagcaggatgggtacacttgacaacattatgaaacacaaaagttggagccta |
112 |
Q |
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|||||| ||||||||||||||| |||||| |||| |||| ||||||| |||||||||||||||||||||| |||| |||||||||||||||| |||| |
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| T |
21549606 |
ttgctttaaaagtaatgtaatataccctaggagcatataaagaagtagcaccaggatgggtacacttgacaactttatcaaacacaaaagttggacccta |
21549507 |
T |
|
| Q |
113 |
at------taaataagt-aaaaga---agaattagtttagttaatgaa |
150 |
Q |
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| T |
21549506 |
atcaataataaataagtaaaaagaattagaattagtttagttaatgaa |
21549459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 399 - 487
Target Start/End: Complemental strand, 21549221 - 21549133
Alignment:
| Q |
399 |
tgaaattgaaattgatagatgcctacacttagaccgctacagagctcattatactcacgaactttagtctcacgatccaaccaagcctt |
487 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||| || | | ||||| ||| ||| ||||| |||||||||| ||||||||| |
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| T |
21549221 |
tgaaattgaaattgatagatgcctacacttagtttgctagagcgatttttatagtcaagaattttagcctcacgatccttccaagcctt |
21549133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 55193938 - 55193886
Alignment:
| Q |
55 |
cagtagcagcaggatgggtacacttgacaacattatgaaacacaaaagttgga |
107 |
Q |
| |
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||||| || ||| ||| |||||||||||||| ||||||||||||||||||||| |
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| T |
55193938 |
cagtaccaccagcatgagtacacttgacaactttatgaaacacaaaagttgga |
55193886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 11031910 - 11031962
Alignment:
| Q |
55 |
cagtagcagcaggatgggtacacttgacaacattatgaaacacaaaagttgga |
107 |
Q |
| |
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||||| || ||| ||| |||||||||||||| ||||||| ||||||||||||| |
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| T |
11031910 |
cagtaccaccagcatgagtacacttgacaactttatgaaccacaaaagttgga |
11031962 |
T |
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