View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15837_low_5 (Length: 380)
Name: NF15837_low_5
Description: NF15837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15837_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 5 - 361
Target Start/End: Original strand, 20361810 - 20362160
Alignment:
| Q |
5 |
aaaggaaaacctgatctaacaactttccagactcatgttgttcaagatcctggtgttgatgttgttgatgttgatgtcaaaaagtttctcattaaaacct |
104 |
Q |
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| T |
20361810 |
aaaggaaaacctgatctaacaactttccagactcatgttgttcaagatcctggtgttgatattgttgatgttgatgtcaaaaagtttctcattaaaacct |
20361909 |
T |
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| Q |
105 |
aatacaccccgccatggttatggttatggttatggttagtaatcataacaacatacccatcttttcattttaccgtacatatactttgctgctgctgcat |
204 |
Q |
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| T |
20361910 |
aatacaccccgccatgg------ttatggttatggttagtaatcataacaacatacccatcttttcattttaccgtacatatactttgctgctgctgcat |
20362003 |
T |
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| Q |
205 |
tatatgtaatcacaccggtatgcccctaacccttgattatgtattccttttgcaggaatctacctgccatgaatatgcttgttttggttgcgctggaaag |
304 |
Q |
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| T |
20362004 |
tatatgtaatcacaccggtatgcccctaacccttgattatgtattccttttgcaggaatctacctgccatggatatgcttgttttggttgcgctggaaag |
20362103 |
T |
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| Q |
305 |
acttgtttgtaggtgtagttaattaaataaatatgatgggtgtttatgactttatgt |
361 |
Q |
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| T |
20362104 |
acttgtttgtaggtgtagttaattaaataaatatgatgggtgtttatgactttatgt |
20362160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 130 - 275
Target Start/End: Original strand, 21549737 - 21549882
Alignment:
| Q |
130 |
atggttatggttagtaatcataacaacatacccatcttttcattttaccgtacatatactttgctgctgctgcattatatgtaatcacaccggtatgccc |
229 |
Q |
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| T |
21549737 |
atggttatggttagtaatcataacaacatatccatcttttcattttaccatacatatacgttgctgctgctgcattatatttaatcacatcggtatgccc |
21549836 |
T |
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| Q |
230 |
ctaacccttgattatgtattccttttgcaggaatctacctgccatg |
275 |
Q |
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| T |
21549837 |
ctaacccttaattatgcattccttttgcaggaatctacctgccatg |
21549882 |
T |
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