View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15837_low_7 (Length: 358)
Name: NF15837_low_7
Description: NF15837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15837_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 295; Significance: 1e-166; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 19 - 343
Target Start/End: Complemental strand, 18107986 - 18107665
Alignment:
| Q |
19 |
tattcatgcattcagtctctaagtgtgtgtatttggaataggtttgctcacaaagaccaaacctcaaaacatgataaaagaacaaagccaaagaaacatt |
118 |
Q |
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| T |
18107986 |
tattcatgcattcagtctctaagtgtgtgtatttggaataggtctgctcacaaagaccaaacctcaaaacatgataaaagaacaaagccaaagaaaaatt |
18107887 |
T |
|
| Q |
119 |
aacatcagaaattggattcaccaaacccaacttgggaagatgttactagaatacaaaatcagcagcatacctaaagagttaccaaacttgcactgttgca |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| || |
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| T |
18107886 |
aacatcagaaattggattcaccaaacccaacttgggaagatgttactagtatacaaaatcagca---tacctaaagagttaccaaacttgcactgttcca |
18107790 |
T |
|
| Q |
219 |
aactatagtacatccatacctaccttctaaattttcaatttctgcatttatatttcatattaggcagtattatcaaccagaagattgtgcatcagtggca |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18107789 |
aactatagtacatccatacctaccttctaaattttcaatttctgcatttatatttcatattaggcagtattatcaaccagaagattgtgcatcagtggca |
18107690 |
T |
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| Q |
319 |
aaataaagcaccgggtagcattttc |
343 |
Q |
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||||||||||||||||||||||||| |
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| T |
18107689 |
aaataaagcaccgggtagcattttc |
18107665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 20 - 328
Target Start/End: Original strand, 18137999 - 18138302
Alignment:
| Q |
20 |
attcatgcattcagtctctaagtgtgtgtatttggaataggtttg-ctcacaaagaccaaacctcaaaacatgataaaagaacaaagccaaagaaacatt |
118 |
Q |
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|||||| |||||| ||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||| ||| |
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| T |
18137999 |
attcatacattcaatctctaagtgtgt--atttggaataggtttttctcacaaagaccaa-cctcaaaacatgataaaagaacgaagccaaagaaaaatt |
18138095 |
T |
|
| Q |
119 |
aacatcagaaattggattcaccaaacccaacttgggaagatgttactagaatacaaaatcagcagcatacctaaagagttaccaaacttgcactgttgca |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | || ||||||||||||| ||||||||||||| || |
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| T |
18138096 |
aacatcagaaattggattcaccaaacccaacttgggaagatgttactagtatacaaaatcagga---tatctaaagagttacctaacttgcactgttcca |
18138192 |
T |
|
| Q |
219 |
aactatagtacatccatacctaccttctaaattttcaatttctgcatttatatttcatattaggcagtattatcaaccagaagattgtgcatcagtggca |
318 |
Q |
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||||||||||||| |||||||||||||| || ||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |||||| |||| |
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| T |
18138193 |
aactatagtacattcatacctaccttctgaaatttcaatttctgcatttatatttattattaggcagtattataaaccagaagattgtacatcagcggca |
18138292 |
T |
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| Q |
319 |
aaataaagca |
328 |
Q |
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|||||||||| |
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| T |
18138293 |
aaataaagca |
18138302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 78 - 304
Target Start/End: Complemental strand, 18098397 - 18098182
Alignment:
| Q |
78 |
aacctcaaaacatgataaaagaacaaagccaaagaaacattaacatcagaaattggattcaccaaacccaacttgggaagatgttactagaatacaaaat |
177 |
Q |
| |
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|||||||||||| |||||||||||||||||| |||||||||| |||||| ||||||||||||||||| || |||||||||||||||| || ||| |
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| T |
18098397 |
aacctcaaaacaggataaaagaacaaagccatagaaacatta---tcagaacttggattcaccaaacccgacctgggaagatgttactataa-----aat |
18098306 |
T |
|
| Q |
178 |
cagcagcatacctaaagagttaccaaacttgcactgttgcaaactatagtacatccatacctaccttctaaattttcaatttctgcatttatatttcata |
277 |
Q |
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||| | ||| ||||||||||| | ||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| || |
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| T |
18098305 |
cagga-cat--ctaaagagttatctaacttttactgttccaaactatagtacattgatacctaccttctaaattttcaatttctgcattgatatttccta |
18098209 |
T |
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| Q |
278 |
ttaggcagtattatcaaccagaagatt |
304 |
Q |
| |
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|||| ||||||||| |||||||||||| |
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| T |
18098208 |
ttagacagtattataaaccagaagatt |
18098182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 27 - 139
Target Start/End: Original strand, 15951715 - 15951824
Alignment:
| Q |
27 |
cattcagtctctaagtgtgtgtatttggaataggttt-gctcacaaagaccaaacctcaaaacatgataaaagaacaaagccaaagaaacattaacatca |
125 |
Q |
| |
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|||||| ||||||||||||| ||||||||||||||| ||||||||||||||| ||| ||||||||||||||||| ||||| |||||| | |||||||| |
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| T |
15951715 |
cattcaatctctaagtgtgt--atttggaataggttttgctcacaaagaccaa-cctttaaacatgataaaagaacgaagccgaagaaa-aataacatca |
15951810 |
T |
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| Q |
126 |
gaaattggattcac |
139 |
Q |
| |
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|||||||||||||| |
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| T |
15951811 |
gaaattggattcac |
15951824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 234 - 304
Target Start/End: Complemental strand, 18082957 - 18082887
Alignment:
| Q |
234 |
atacctaccttctaaattttcaatttctgcatttatatttcatattaggcagtattatcaaccagaagatt |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| || ||||||||| |
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| T |
18082957 |
atacctaccttctaaattttcaatttctgcattgatatttcctattaggcagtattataaatcagaagatt |
18082887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 217 - 274
Target Start/End: Original strand, 11547626 - 11547683
Alignment:
| Q |
217 |
caaactatagtacatccatacctaccttctaaattttcaatttctgcatttatatttc |
274 |
Q |
| |
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||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||| |
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| T |
11547626 |
caaactatagtacattgatacataccttctaaatttccaatttctgcatttatatttc |
11547683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 78 - 177
Target Start/End: Complemental strand, 18083074 - 18082978
Alignment:
| Q |
78 |
aacctcaaaacatgataaaagaacaaagccaaagaaacattaacatcagaaattggattcaccaaacccaacttgggaagatgttactagaatacaaaat |
177 |
Q |
| |
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|||||||||||| | |||||||||||||||| ||||||||| |||||| |||||||||||||||| || |||||||||||| ||| ||||||||| |
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| T |
18083074 |
aacctcaaaacaagttaaaagaacaaagccatagaaacatt---atcagagcttggattcaccaaacctgacctgggaagatgttcctaatatacaaaat |
18082978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 272
Target Start/End: Original strand, 11552387 - 11552442
Alignment:
| Q |
217 |
caaactatagtacatccatacctaccttctaaattttcaatttctgcatttatatt |
272 |
Q |
| |
|
||||||||||||||| |||| |||||| ||||||| ||||||||||||||||||| |
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| T |
11552387 |
caaactatagtacattgatacgtaccttttaaatttccaatttctgcatttatatt |
11552442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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