View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15837_low_8 (Length: 328)

Name: NF15837_low_8
Description: NF15837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15837_low_8
NF15837_low_8
[»] chr1 (1 HSPs)
chr1 (16-311)||(47183338-47183633)


Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 16 - 311
Target Start/End: Original strand, 47183338 - 47183633
Alignment:
Q  16 aaaataggagaagataacattggatctaacaagtgattatttttatctatccacgcaaggatttgaaatctaatttggttttgaccttttatctcttccg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47183338 aaaataggagaagataacattggatctaacaagtgattatttttatctatccacgcaaggatttgaaatctaatttggttttgaccttttatctcttccg 47183437  T
Q  116 tcattggtggagttcctatatatagatgttagatgtatatatatacactgctaagttaacgtgagaagttatcagaaatctttcatcaaaatctttctct 215  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47183438 tcattgggggagttcctatatatagatgttagatgtatatatatacactgctaagttaacgtgagaagttatcagaaatctttcatcaaaatctttctct 47183537  T
Q  216 gatcttacattcattatttccaatttcattcaatctcttggttgcaaggttatccttcaaccttgaggtattgttcgatacttaaagatcaatctg 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47183538 gatcttacattcattatttccaatttcattcaatctcttggttgcaaggttatccttcaaccttgaggtattgttcgatacttaaagatcaatctg 47183633  T

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