View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15837_low_9 (Length: 320)
Name: NF15837_low_9
Description: NF15837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15837_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 11 - 302
Target Start/End: Complemental strand, 46885280 - 46884989
Alignment:
| Q |
11 |
taattcttcaccaagacagcagcacgatactgctatttctactgctgtcatgccttctcacattgctgttcagcagcagctgctgcccactagtgttcca |
110 |
Q |
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| T |
46885280 |
taattcttcaccaagacagcagcacgatactgctatttctcctgctgtcatgccttctcacgttgctgttcagcagcagctgctgcccactagtgttcca |
46885181 |
T |
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| Q |
111 |
agcatcactcgttggcagaaaccactcccgggtcgtttaaaatgtaacattagtgcggcgttttccactgttttgaaccgggttgggataggcatgtgtt |
210 |
Q |
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| T |
46885180 |
ggcatcactcgttggcagaaaccactcccgggtcgtttaaaatgtaacattagtgcggcgttttccactgttttgaaccgggttgggataggcatgtgtt |
46885081 |
T |
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| Q |
211 |
tacgcgatgatgaaggtgcttgtatgttagctaagaccatgagtctctcgcccctggagtgcctgtcaatgtaggagaagcacttgctttat |
302 |
Q |
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| T |
46885080 |
tacgcgatgatgaaggtgcttatatgttagctaagaccatgagtctctcgcccctggagtgcctgtcaatgtaggagaagcacttgctttat |
46884989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 182 - 302
Target Start/End: Complemental strand, 24102161 - 24102043
Alignment:
| Q |
182 |
tttgaaccgggttgggataggcatgtgtttacgcgatgatgaaggtgcttgtatgttagctaagaccatgagtctctcgcccctggagtgcctgtcaatg |
281 |
Q |
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||||||| ||||| |||| | || |||| ||| |||| ||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||| |
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| T |
24102161 |
tttgaactaggttgagatatgaatatgttcacgtgatgctgaaggtgcttacatgttagccaagaccatgagtctctcgcccctg--gtgcctgtcaatg |
24102064 |
T |
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| Q |
282 |
taggagaagcacttgctttat |
302 |
Q |
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| T |
24102063 |
tatgggaagcacttgctttat |
24102043 |
T |
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