View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15838_high_5 (Length: 247)
Name: NF15838_high_5
Description: NF15838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15838_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 42038988 - 42039227
Alignment:
| Q |
1 |
acatatagtaattagtcatacgtagtgaaatcaaattaaggatgcatgtagatttagtcatagcatgtgcatttggttttaattagagcttcttgcaggg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
42038988 |
acatatagtaattagtcatacgtagtgaaatcaaattaaggatgcatgt----ttagtcatagcatgtgcatttggttttaattaaagcttcttgcaggg |
42039083 |
T |
|
| Q |
101 |
acaaatgctagcaagtaggcaaataaaatgtgagctaacacaaatatattgtaaagaatttcaacttgagttcatatacttttgtttaacatagtagtac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42039084 |
acaaatgctagcaagtaggcaaataaaatgtgagctaaaacaaatatattgtaaagaatttcaacttgagttcatatacttttgtttaacatagtagtac |
42039183 |
T |
|
| Q |
201 |
ttttaaaacatattcaaacagtgtgatataattaaattagaggt |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42039184 |
ttttaaaacatattcaaacagtgtgatataattaaattagaggt |
42039227 |
T |
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