View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15838_low_10 (Length: 242)
Name: NF15838_low_10
Description: NF15838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15838_low_10 |
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| [»] chr6 (7 HSPs) |
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| [»] scaffold0103 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 1909251 - 1909500
Alignment:
| Q |
1 |
ttaatgcattttgcagtataattggagccacaataatatcaattggtctttatgctgtattatggggcaaagctacagaagagatagaggaagatgttgg |
100 |
Q |
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| T |
1909251 |
ttaatgcattttgcagtataattggagccacaataatatcaattggtctttatgctgtattatggggcaaagctacagaagagatagaggaagatgttgg |
1909350 |
T |
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| Q |
101 |
tagtttggagtcaccatctaatgagaatgcacctcttttgcaaagctctagaactcaaacttttgaaaataaaacaaatggaaatgtttaaaatatc--- |
197 |
Q |
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| T |
1909351 |
tagtttggagtcaccatctaatgagaatgcacctcttttgcaaagctctagaactcaaacttttgaaaataaaacaaatggaaatgtttaaaatatcatt |
1909450 |
T |
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| Q |
198 |
-----attgagattcaaatacaatccgaacttcatatatattgaattata |
242 |
Q |
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| T |
1909451 |
atcaaattgagattcaaatacaatccgaacttcatatatatttaattata |
1909500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 1905018 - 1905249
Alignment:
| Q |
1 |
ttaatgcattttgcagtataattggagccacaataatatcaattggtctttatgctgtattatggggcaaagctacagaagagatagaggaagatgttgg |
100 |
Q |
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| T |
1905018 |
ttaatgcattttgcagtataattggagccacaataatatcaattggtctttatgctgtattatggggcaaagctacagaagagatagaggaagatgttgg |
1905117 |
T |
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| Q |
101 |
tagtttggagtcaccatctaatgagaatgcacctcttttgcaaagctctagaactcaaacttttgaaaataaaacaaatggaaatgtttaaaatatc--- |
197 |
Q |
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| T |
1905118 |
tagtttggagtcaccatctaatgagaatgcacctcttttgcaaagctctagaactcaaacttttgaaaataaaacaaatggaaatgtttaaaatatcatt |
1905217 |
T |
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| Q |
198 |
-----attgagattcaaatacaatccgaactt |
224 |
Q |
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| T |
1905218 |
atcaaattgagattcaaatacaatccgaactt |
1905249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 7 - 196
Target Start/End: Original strand, 1899561 - 1899750
Alignment:
| Q |
7 |
cattttgcagtataattggagccacaataatatcaattggtctttatgctgtattatggggcaaagctacagaagagatagaggaagatgttggtagttt |
106 |
Q |
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| T |
1899561 |
cattgtgcagtataattggagccacaatagtatcgattggcctttatgctatattatggggcaaagctacagaagagatagaggaagatgttggtagttt |
1899660 |
T |
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| Q |
107 |
ggagtcaccatctaatgagaatgcacctcttttgcaaagctctagaactcaaacttttgaaaataaaacaaatggaaatgtttaaaatat |
196 |
Q |
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| T |
1899661 |
ggagtcaccatctaatgagaatgcacctcttttgcaaagctctagaactcacacttttgacaataaaacaaatggaactgtttaaaatat |
1899750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 4 - 193
Target Start/End: Original strand, 1914566 - 1914758
Alignment:
| Q |
4 |
atgcattttgcagtataattggagccacaataatatcaattggtctttatgctgtattatggggcaaagctacagaagagatagaggaagatgt---tgg |
100 |
Q |
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| T |
1914566 |
atgcattttgcagtataattggagccataataatctcaattggtctttatgctgtattatggggcaaagctacagaagagatagaggaagatgttggtgg |
1914665 |
T |
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| Q |
101 |
tagtttggagtcaccatctaatgagaatgcacctcttttgcaaagctctagaactcaaacttttgaaaataaaacaaatggaaatgtttaaaa |
193 |
Q |
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| T |
1914666 |
tagcttgcagtcaccatctactgagaatgcacctcttttgcaaagcaatagagcagaaacttttgaaaagaaaatagatggaaatgtttaaaa |
1914758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 7 - 193
Target Start/End: Original strand, 1893649 - 1893835
Alignment:
| Q |
7 |
cattttgcagtataattggagccacaataatatcaattggtctttatgctgtattatggggcaaagctacagaagagatagaggaagatgttggtagttt |
106 |
Q |
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|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| | |
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| T |
1893649 |
cattgtgcagtataattggagccacaataatcacaattggtctttatgctgtattatggggcaaagcaacagaaaagatagaggaagatgttggtagcct |
1893748 |
T |
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| Q |
107 |
ggagtcaccatctaatgagaatgcacctcttttgcaaagctctagaactcaaacttttgaaaataaaacaaatggaaatgtttaaaa |
193 |
Q |
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| T |
1893749 |
agagtcaccatctatagagaatgcacctcttttacaaagttatagaactgaaacatttgaaaagaaaacaaatggaaatatttaaaa |
1893835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 14 - 193
Target Start/End: Original strand, 1881482 - 1881661
Alignment:
| Q |
14 |
cagtataattggagccacaataatatcaattggtctttatgctgtattatggggcaaagctacagaagagatagaggaagatgttggtagtttggagtca |
113 |
Q |
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| T |
1881482 |
cagtataattggagccataatcatctcaacaggtctttatgctgtaatgtggggcaaatcaagagaagagatagaggaagatgttggtagctcagagtca |
1881581 |
T |
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| Q |
114 |
ccatctaatgagaatgcacctcttttgcaaagctctagaactcaaacttttgaaaataaaacaaatggaaatgtttaaaa |
193 |
Q |
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| T |
1881582 |
ccatctacagataatgcacctctattgcaaagctgtagaattgaaacttttgaaaacaaaacaaatggaaatgtttaaaa |
1881661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 15 - 190
Target Start/End: Original strand, 1888486 - 1888661
Alignment:
| Q |
15 |
agtataattggagccacaataatatcaattggtctttatgctgtattatggggcaaagctacagaagagatagaggaagatgttggtagtttggagtcac |
114 |
Q |
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| T |
1888486 |
agtataattggagccttaatcatctcaattggcctttatgctgtaatgtggggcaaatcaagagaagagatagaggaagatgttggtagctcagagtcac |
1888585 |
T |
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| Q |
115 |
catctaatgagaatgcacctcttttgcaaagctctagaactcaaacttttgaaaataaaacaaatggaaatgttta |
190 |
Q |
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|||||| || ||||||||||| |||||||||| ||||| | ||||||||||||| ||||||||||||| |||||| |
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| T |
1888586 |
catctacagataatgcacctctattgcaaagctgtagaattgaaacttttgaaaacaaaacaaatggaattgttta |
1888661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0103 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 83
Target Start/End: Original strand, 46439 - 46513
Alignment:
| Q |
9 |
ttttgcagtataattggagccacaataatatcaattggtctttatgctgtattatggggcaaagctacagaagag |
83 |
Q |
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| T |
46439 |
ttttgcagtttaattggagccacaataatatcaattgggttttatactgtaatgtggggtaaagcaaaagaagag |
46513 |
T |
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