View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15838_low_2 (Length: 487)
Name: NF15838_low_2
Description: NF15838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15838_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 416; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 10 - 449
Target Start/End: Original strand, 37503858 - 37504297
Alignment:
| Q |
10 |
catcatcattatctactctaataataatatcaaactctcctacattatgtgaccctaatcctctcccaacagcattatcagagctttctgtatgtccttg |
109 |
Q |
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| T |
37503858 |
catcatcattatctactctaataataatatcaaactctcctacattatgtgaccctaatcctctcccaacagcattatcagagctttctgtatgtccttg |
37503957 |
T |
|
| Q |
110 |
attctgagtctcaacagaaatatttgaaattgaatcaagttgatcagtgactgtgatactcacctctgcagcatcattgatcacaggtgcacgacacagc |
209 |
Q |
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| T |
37503958 |
attctgagtgtcaccagaaatatttgaaattgaatcaagttgatcagtgactgtgatactcacctctgcagcatcattgataacaggtgcacgacacagc |
37504057 |
T |
|
| Q |
210 |
ggacaattcttgtgtgaactaagccaagtatcaatacaagggatatgaaaagcgtggctacacttaggcaaaattctgagactctcttcctcttgaaatt |
309 |
Q |
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| T |
37504058 |
ggacaattcttgtgtgaactaagccaagtatcaatacaagggatatgaaaagcgtggctacacttaggcaaaattctgagactctcttcctcttgaaatt |
37504157 |
T |
|
| Q |
310 |
cacctagacaaacagaacactctgtcccatcaacgagtccttcgtcttttccgtatttgaagactgtaatggaatctatcaccgatcgttgaagccctac |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37504158 |
cacctagacaaacagaacactctgtcccatcaacgagtccttcgtcttttctgtatttgaagactgtaatggaatctatcaccgatcgttgaagccctac |
37504257 |
T |
|
| Q |
410 |
agtacggataaaccatatgggatgatcaacaataaccctc |
449 |
Q |
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| T |
37504258 |
cgtacggatgaaccatatgggatgatcaacaataaccctc |
37504297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 334
Target Start/End: Original strand, 27771620 - 27771725
Alignment:
| Q |
229 |
taagccaagtatcaatacaagggatatgaaaagcgtggctacacttaggcaaaattctgagactctcttcctcttgaaattcacctagacaaacagaaca |
328 |
Q |
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||||||| |||||||||||||| | ||||||| | ||| ||||| | || |||| ||| | ||| || || |||||||| |||| ||||||||| ||||| |
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| T |
27771620 |
taagccatgtatcaatacaaggaagatgaaaaacatggttacacattggtaaaagtctaacactttcatcatcttgaaactcacttagacaaactgaaca |
27771719 |
T |
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| Q |
329 |
ctctgt |
334 |
Q |
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||||| |
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| T |
27771720 |
atctgt |
27771725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 220 - 342
Target Start/End: Original strand, 37227852 - 37227974
Alignment:
| Q |
220 |
tgtgtgaactaagccaagtatcaatacaagggatatgaaaagcgtggctacacttaggcaaaattctgagactctcttcctcttgaaattcacctagaca |
319 |
Q |
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||||||| ||||||||||||||||||||||| | ||||||||| ||| ||||||| ||||||| ||| ||| |||| || |||| ||| |||| | ||| |
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| T |
37227852 |
tgtgtgatctaagccaagtatcaatacaaggtaaatgaaaagcatggttacactttggcaaaagtctaagattctcatcttcttcaaactcactcaaaca |
37227951 |
T |
|
| Q |
320 |
aacagaacactctgtcccatcaa |
342 |
Q |
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||||||||| |||| ||||||| |
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| T |
37227952 |
aacagaacaatctgatccatcaa |
37227974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 231 - 343
Target Start/End: Original strand, 12617819 - 12617931
Alignment:
| Q |
231 |
agccaagtatcaatacaagggatatgaaaagcgtggctacacttaggcaaaattctgagactctcttcctcttgaaattcacctagacaaacagaacact |
330 |
Q |
| |
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||||| |||||||||||||| | ||||||||| |||||||| ||||| |||| ||| | |||||| || |||||||| || ||||||||||||||| | |
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| T |
12617819 |
agccatgtatcaatacaaggaagatgaaaagcatggctacatttaggtaaaagtctaatactctcatcgtcttgaaactcgtttagacaaacagaacaat |
12617918 |
T |
|
| Q |
331 |
ctgtcccatcaac |
343 |
Q |
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|||| ||||||| |
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| T |
12617919 |
ctgttacatcaac |
12617931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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