View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15838_low_4 (Length: 464)
Name: NF15838_low_4
Description: NF15838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15838_low_4 |
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| [»] scaffold0374 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 423; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 12 - 446
Target Start/End: Original strand, 42874946 - 42875380
Alignment:
| Q |
12 |
cagagagaagattttcaagtttcttgacggagaagttactaactccaatagctttggtgagtccaagtttcaatccttcttccatggattcccaaacacc |
111 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42874946 |
cagagagaagattttcaagtttcttgacagagaagttactaactccaatagctttggtgagtccaagtttcaatccttcttccatggattcccaaacacc |
42875045 |
T |
|
| Q |
112 |
cttcacatcaaatggtaagagatctgccacatcaattggaaatgtaaactttccaggttgagagctaagtggccaatgaatcaaatacaaatccaagtag |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
42875046 |
cttcacatcaaatggtaagagatctgccacatcaattggaaatgtaaactttccaggctgagagctaagtggccaatgaatcaaatacaaatccaagtag |
42875145 |
T |
|
| Q |
212 |
tccaattgaagagtcctacatgaaattaacaaatcaagatcaaaattaatttttatcattgtagaatcaaacatcctccaaatgaatgtaatattgatat |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42875146 |
tccaattgaagagtcctacatgaaattaacaaatcaagatcaaaattaatttttatcattgtagaatcaaacatcctccaaatgaatgtaatattgatat |
42875245 |
T |
|
| Q |
312 |
gaataaaaatttacttacttgagagatttttgaagagcaggaataacaagatgaggatgattttcagtaacccaaagtttagaagtaacaaaaaggtctt |
411 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42875246 |
gaattaaaatttacttacttgagagatttttgaagagcaggaataacaagatgaggatgattttcagtaacccaaagtttagaagtaacaaaaaggtctt |
42875345 |
T |
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| Q |
412 |
gtctagtgacaagaccaagttcaattgcttctttc |
446 |
Q |
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| T |
42875346 |
gtctagtgacaagaccaagttcaattgcttctttc |
42875380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 12 - 446
Target Start/End: Original strand, 42884077 - 42884511
Alignment:
| Q |
12 |
cagagagaagattttcaagtttcttgacggagaagttactaactccaatagctttggtgagtccaagtttcaatccttcttccatggattcccaaacacc |
111 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42884077 |
cagagagaagattttcaagtttcttgacagagaagttactaactccaatagctttggtgagtccaagtttcaatccttcttccatggattcccaaacacc |
42884176 |
T |
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| Q |
112 |
cttcacatcaaatggtaagagatctgccacatcaattggaaatgtaaactttccaggttgagagctaagtggccaatgaatcaaatacaaatccaagtag |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
42884177 |
cttcacatcaaatggtaagagatctgccacatcaattggaaatgtaaactttccaggctgagagctaagtggccaatgaatcaaatacaaatccaagtag |
42884276 |
T |
|
| Q |
212 |
tccaattgaagagtcctacatgaaattaacaaatcaagatcaaaattaatttttatcattgtagaatcaaacatcctccaaatgaatgtaatattgatat |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42884277 |
tccaattgaagagtcctacatgaaattaacaaatcaagatcaaaattaatttttatcattgtagaatcaaacatcctccaaatgaatgtaatattgatat |
42884376 |
T |
|
| Q |
312 |
gaataaaaatttacttacttgagagatttttgaagagcaggaataacaagatgaggatgattttcagtaacccaaagtttagaagtaacaaaaaggtctt |
411 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42884377 |
gaattaaaatttacttacttgagagatttttgaagagcaggaataacaagatgaggatgattttcagtaacccaaagtttagaagtaacaaaaaggtctt |
42884476 |
T |
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| Q |
412 |
gtctagtgacaagaccaagttcaattgcttctttc |
446 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
42884477 |
gtctagtgacaagaccaagttcaattgcttctttc |
42884511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 12 - 446
Target Start/End: Complemental strand, 42890355 - 42889921
Alignment:
| Q |
12 |
cagagagaagattttcaagtttcttgacggagaagttactaactccaatagctttggtgagtccaagtttcaatccttcttccatggattcccaaacacc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42890355 |
cagagagaagattttcaagtttcttgacagagaagttactaactccaatagctttggtgagtccaagtttcaatccttcttccatggattcccaaacacc |
42890256 |
T |
|
| Q |
112 |
cttcacatcaaatggtaagagatctgccacatcaattggaaatgtaaactttccaggttgagagctaagtggccaatgaatcaaatacaaatccaagtag |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
42890255 |
cttcacatcaaatggtaagagatctgccacatcaattggaaatgtaaactttccaggctgagagctaagtggccaatgaatcaaatacaaatccaagtag |
42890156 |
T |
|
| Q |
212 |
tccaattgaagagtcctacatgaaattaacaaatcaagatcaaaattaatttttatcattgtagaatcaaacatcctccaaatgaatgtaatattgatat |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42890155 |
tccaattgaagagtcctacatgaaattaacaaatcaagatcaaaattaatttttatcattgtagaatcaaacatcctccaaatgaatgtaatattgatat |
42890056 |
T |
|
| Q |
312 |
gaataaaaatttacttacttgagagatttttgaagagcaggaataacaagatgaggatgattttcagtaacccaaagtttagaagtaacaaaaaggtctt |
411 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42890055 |
gaattaaaatttacttacttgagagatttttgaagagcaggaataacaagatgaggatgattttcagtaacccaaagtttagaagtaacaaaaaggtctt |
42889956 |
T |
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| Q |
412 |
gtctagtgacaagaccaagttcaattgcttctttc |
446 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
42889955 |
gtctagtgacaagaccaagttcaattgcttctttc |
42889921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0374 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0374
Description:
Target: scaffold0374; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 325 - 394
Target Start/End: Complemental strand, 13285 - 13216
Alignment:
| Q |
325 |
cttacttgagagatttttgaagagcaggaataacaagatgaggatgattttcagtaacccaaagtttaga |
394 |
Q |
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|||||| ||| ||||| ||||||||||||| ||||||||||||| ||| |||||||||||||||||||| |
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| T |
13285 |
cttactggagtgatttctgaagagcaggaagaacaagatgaggaaaattatcagtaacccaaagtttaga |
13216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 403
Target Start/End: Original strand, 37505451 - 37505521
Alignment:
| Q |
333 |
agagatttttgaagagcaggaataacaagatgaggatgattttcagtaacccaaagtttagaagtaacaaa |
403 |
Q |
| |
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|||||||| || |||||||||| || || | ||||||||| ||||||||||| | ||||||||||||||| |
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| T |
37505451 |
agagatttctgcagagcaggaacaatgagctcaggatgattatcagtaacccataatttagaagtaacaaa |
37505521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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