View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15838_low_5 (Length: 403)
Name: NF15838_low_5
Description: NF15838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15838_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 13 - 389
Target Start/End: Complemental strand, 35971146 - 35970770
Alignment:
| Q |
13 |
aaggcgtttgtagtcgagatgtgagagaatgagtaacatatcacaatctgttgnnnnnnncttcttcttaattttaatttagttgaattatctagaaaat |
112 |
Q |
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| T |
35971146 |
aaggcgtttgtagtcgagatgtgagagaatgagtaacatatcacaatctgttgtttttttcttcttcttaatttaaatttagttgaattatctagaaaat |
35971047 |
T |
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| Q |
113 |
ataatatattgtagcaaatttgtgtattttaattggttgttagtgtatttgtcaaaaaataatgtttttctgtgtaaaattgtttcagtatacgaccttt |
212 |
Q |
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| T |
35971046 |
ataatatattgtagcaaatttgtgtattttaattggttgttagtgtatttgtcaaaaaataatgtttttctgtgtaaaattgtttcagtatacgaccttt |
35970947 |
T |
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| Q |
213 |
aacctcgtaatttaaaatgagcaaagtaggatggagaggagaataaatctcatataccattgtttggataatttccgatgaaattaaattaagtattcca |
312 |
Q |
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| T |
35970946 |
aacctcgtaatttaaaatgagcaaagttggatggagaggagaataaatctcatataccattgtttggataatttccgatgaaattaaataaagtattcca |
35970847 |
T |
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| Q |
313 |
ttgttagaatcaaaacggattatcattttttacccttcttaaacattgttcatgtatgtgaacacaaatgaaagatc |
389 |
Q |
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| T |
35970846 |
ttgttagaatcagaacggattatcattttttacccttcttaaacattgttcatgtatgtgaacacaaatgaaagatc |
35970770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 76 - 389
Target Start/End: Complemental strand, 35975287 - 35974967
Alignment:
| Q |
76 |
cttcttaattttaatttagttgaattatctagaaaatat-aatatattgtagcaaatttgtgtattttaattggttgttagtgtatttgtca------aa |
168 |
Q |
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| T |
35975287 |
cttcttaatttaaatttagttgaattatctagaaaatattaatatattgtggcaaatttgtgtattttaattgtttgttagtgtatttgtcagcaaaaaa |
35975188 |
T |
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| Q |
169 |
aaataatgtttttctgtgtaaaattgtttcagtatacgacctttaacctcgtaatttaaaatgagcaaagtaggatggagaggagaataaatctcatata |
268 |
Q |
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||| | ||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||| |
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| T |
35975187 |
aaaaattgtttgttagtgtaaaattgtttcagtatacgacctttaacctcataatttaaaatgagcaaagtaggatggagaggagaagaaatcttatata |
35975088 |
T |
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| Q |
269 |
ccattgtttggataatttccgatgaaattaaattaagtattccattgttagaatcaaaacggattatcattttttacccttcttaaacattgttcatgta |
368 |
Q |
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|||||||||||| |||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
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| T |
35975087 |
ccattgtttggagaatttccgatgaaattaaataaagtattccattgttagaatcagaatggattatcattttttacccttcttaaacattgttcatgta |
35974988 |
T |
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| Q |
369 |
tgtgaacacaaatgaaagatc |
389 |
Q |
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||| ||||||||||||||||| |
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| T |
35974987 |
tgtaaacacaaatgaaagatc |
35974967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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