View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15838_low_6 (Length: 327)
Name: NF15838_low_6
Description: NF15838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15838_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 1e-87; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 120 - 323
Target Start/End: Complemental strand, 42339652 - 42339449
Alignment:
| Q |
120 |
tagaaccttgacaaacctacaaacaaaagaaaattttaacataaaaagacaaataggatgttatcagcaaaacagtagtacgacaacaaaaagaggaaag |
219 |
Q |
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| T |
42339652 |
tagaaccttgacaaacctacaaacaaaagaaagtttcaacataaaaagacaaataggatgttatcagcaaaacagtagtacgacaacaaaaagaggaaag |
42339553 |
T |
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| Q |
220 |
actgttgaatcgacctctaccaccgcttcctcttccactgctcgatctaccaccatccaagcatttcgatatacattgagccataaataacgtctcttgt |
319 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||| | || |||||||||||| ||||||||||||| |
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| T |
42339552 |
actgttgaatcgacctctaccaccacttcctcttccactgctcgttctaccaccatcaaagcatttcaaattagattgagccataagtaacgtctcttgt |
42339453 |
T |
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| Q |
320 |
tggt |
323 |
Q |
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|||| |
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| T |
42339452 |
tggt |
42339449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 144 - 218
Target Start/End: Complemental strand, 42339831 - 42339758
Alignment:
| Q |
144 |
aaaagaaaattttaacataaaaagacaaataggatgttatcagcaaaacagtagtacgacaacaaaaagaggaaa |
218 |
Q |
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|||||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||| | |||||||||||| |
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| T |
42339831 |
aaaagaaaatttcaacataaaaaaacaaataggatgctatcagcaaaacagtagtacgac-agaaaaagaggaaa |
42339758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 42339769 - 42339716
Alignment:
| Q |
3 |
aaaaagaggaaaatattccatcgctacctataaggctgttgaatagacctctat |
56 |
Q |
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|||||||||||||||| |||||||| ||||||||||| |||||| ||||||||| |
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| T |
42339769 |
aaaaagaggaaaatataccatcgcttcctataaggctattgaatcgacctctat |
42339716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 154
Target Start/End: Complemental strand, 42339869 - 42339836
Alignment:
| Q |
121 |
agaaccttgacaaacctacaaacaaaagaaaatt |
154 |
Q |
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|||||||||||||||| ||||||||||||||||| |
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| T |
42339869 |
agaaccttgacaaaccgacaaacaaaagaaaatt |
42339836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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