View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15838_low_8 (Length: 287)
Name: NF15838_low_8
Description: NF15838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15838_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 11 - 266
Target Start/End: Complemental strand, 42339284 - 42339029
Alignment:
| Q |
11 |
catcatcataaactttataaggggactaaatatcttcattcccaaatttctgtcattaaaacattaaactacaagcaaaagcttaaatggtaagcactat |
110 |
Q |
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| T |
42339284 |
catcataataaactttataaggggactaaatatcttcattcccaaatttctgtcattaaaacattaaactacaagcaaaagcttaaatggtaagtactat |
42339185 |
T |
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| Q |
111 |
gagtagtatgagttgagcagtcacattgcaaccaatcaggggtgaactgtattggccatccaagggacataagcatcttggatacaagggattaaagttg |
210 |
Q |
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| T |
42339184 |
gagtaatatgagttgagcagtcacattgcaaccaatcaggggtgaactgtattgcccatccaagggacataagcatcttggatacaagggattaaagttg |
42339085 |
T |
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| Q |
211 |
taaattgtattgcccatccaatttggataccatccgcgatcgaagctactacggtc |
266 |
Q |
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| T |
42339084 |
caaactgtattgcccatccaatttggataccagccgcgatcgaagctactacggtc |
42339029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 260
Target Start/End: Original strand, 42276362 - 42276436
Alignment:
| Q |
186 |
tcttggatacaagggattaaagttgtaaattgtattgcccatccaatttggataccatccgcgatcgaagctact |
260 |
Q |
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| T |
42276362 |
tcttggatataagggattaaagtgtcgaaatgtattgcccatccaaattggataccaacctctatcgaagctact |
42276436 |
T |
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