View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15839_high_9 (Length: 310)

Name: NF15839_high_9
Description: NF15839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15839_high_9
NF15839_high_9
[»] chr2 (1 HSPs)
chr2 (1-298)||(42804825-42805122)


Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 42805122 - 42804825
Alignment:
Q  1 acttgatcaagacgaaggtgctattcagttaataggcttcccttcccacgtaagcatatgcgctgacaatggcaagaaatcaggatgccacctaaagttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42805122 acttgatcaagacgaaggtgctattcagttaataggcttcccttcccacgtaagcatatgcgctgacaatggcaagaaatcaggatgccacctaaagttg 42805023  T
Q  101 taaacnnnnnnnttgaatgtaatttgatgggattttgaagtgaaggaaagtaaaagtgagtatgagatgcttttttcaatttggagtaagtgtcaaacct 200  Q
    |||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  42805022 taaacaaaaaaattgaatgtaatttgatgggattttgaagtgaaggaaagtaaaagtgagtatgagatgcttttttcaatttggagtaagtgtgaaacct 42804923  T
Q  201 tcctttcatggaggcttgctatgagtagaaggaagaccaagtaggataggggcaatgggaccttatagaagggccattaccattagtattttcttcga 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42804922 tcctttcatggaggcttgctatgagtagaaggaagaccaagtaggataggggcaatgggaccttatagaagggccattaccattagtattttcttcga 42804825  T

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