View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15839_low_17 (Length: 258)
Name: NF15839_low_17
Description: NF15839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15839_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 131 - 236
Target Start/End: Complemental strand, 35420912 - 35420807
Alignment:
| Q |
131 |
ccaccagttagaaaagctttgtcccttacaatgcctcttatccatcaccctccaaccaaaaaaggtgacactcatcaccttgtttcactcacttctacta |
230 |
Q |
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| T |
35420912 |
ccaccagttagaaaagctttgtcccttacaatgcctcttatccatcaccctccaaccaaaaaaggtgacactcatcaccttgtttcactcacttccacta |
35420813 |
T |
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| Q |
231 |
cctatg |
236 |
Q |
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|||||| |
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| T |
35420812 |
cctatg |
35420807 |
T |
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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 142 - 236
Target Start/End: Complemental strand, 19988836 - 19988742
Alignment:
| Q |
142 |
aaaagctttgtcccttacaatgcctcttatccatcaccctccaaccaaaaaaggtgacactcatcaccttgtttcactcacttctactacctatg |
236 |
Q |
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||||||| |||| || ||||||||||| | |||||||||||||| | ||||||||| ||||||||||||||||| ||||| || || ||||||| |
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| T |
19988836 |
aaaagctatgtctctcccaatgcctcttgtgcatcaccctccaacaagaaaaggtgatactcatcaccttgtttccctcacctccaccacctatg |
19988742 |
T |
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