View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15839_low_18 (Length: 254)

Name: NF15839_low_18
Description: NF15839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15839_low_18
NF15839_low_18
[»] scaffold0049 (1 HSPs)
scaffold0049 (51-254)||(38948-39175)
[»] scaffold0434 (2 HSPs)
scaffold0434 (80-254)||(10703-10898)
scaffold0434 (8-52)||(11591-11635)
[»] scaffold0007 (2 HSPs)
scaffold0007 (80-254)||(275179-275379)
scaffold0007 (16-52)||(276071-276107)
[»] chr4 (6 HSPs)
chr4 (7-52)||(46670888-46670933)
chr4 (7-52)||(53437444-53437489)
chr4 (7-52)||(53438877-53438922)
chr4 (7-52)||(55584698-55584743)
chr4 (7-52)||(16420666-16420711)
chr4 (54-91)||(55585393-55585430)
[»] chr2 (3 HSPs)
chr2 (7-52)||(28634240-28634285)
chr2 (7-52)||(41363474-41363519)
chr2 (7-52)||(44679476-44679521)
[»] chr3 (1 HSPs)
chr3 (7-57)||(11773233-11773283)
[»] scaffold0144 (1 HSPs)
scaffold0144 (17-52)||(39782-39817)
[»] chr7 (3 HSPs)
chr7 (7-52)||(9953658-9953703)
chr7 (7-52)||(23410104-23410149)
chr7 (7-40)||(25138090-25138123)
[»] chr6 (2 HSPs)
chr6 (7-52)||(2867949-2867994)
chr6 (7-52)||(2880408-2880453)
[»] chr5 (1 HSPs)
chr5 (7-52)||(41586380-41586425)


Alignment Details
Target: scaffold0049 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 51 - 254
Target Start/End: Original strand, 38948 - 39175
Alignment:
Q  51 ttcgttctcctctcgttttccaaccctcgtattcttcttttcttggcttttatacacgccctctatgatataagctcctccacgtgtgccaaatttttag 150  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38948 ttcgttctcctctcgttttccaaccctcgtattcttctttttttggcttttatacacgccctctatgatataagctcctccacgtgtgccaaatttttag 39047  T
Q  151 gctttctttactctcattcgctgga-----cctttgctgcattagtg-------------------tgcattgagtttcttctttgtggcaaatgcatca 226  Q
    |||||||||||||||||||||||||     ||||||| |||||||||                   ||||||||||||||||||||||||||||||||||    
T  39048 gctttctttactctcattcgctggacctttcctttgccgcattagtgtagggaaagtgggccctggtgcattgagtttcttctttgtggcaaatgcatca 39147  T
Q  227 aattttggcaagtaatgaacaaatgtgg 254  Q
    ||||||||||||||||||||||||||||    
T  39148 aattttggcaagtaatgaacaaatgtgg 39175  T

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Target: scaffold0434 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: scaffold0434
Description:

Target: scaffold0434; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 80 - 254
Target Start/End: Complemental strand, 10898 - 10703
Alignment:
Q  80 tattcttctttt-cttggcttttatacacgccctctatgatataagctcctccacgtgtgccaaatttttaggctttctttactctcattcgctgga--- 175  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||       
T  10898 tattcttcttttacttggcttttatacacgccctctatgatataagctcctccacgtgtgccaaatttttaggctttctttactc----tcgctggacct 10803  T
Q  176 --cctttgctgcattag-------------------tgtgcattgagtttcttctttgtggcaaatgcatcaaattttggcaagtaatgaacaaatgtgg 254  Q
      |||||||||||||||                   |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10802 ttcctttgctgcattagtgtagtgaaagtgggcccttgtgcattcagtttcttctttgtggcaaatgcatcaaattttggcaagtaatgaacaaatgtgg 10703  T

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Target: scaffold0434; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 11635 - 11591
Alignment:
Q  8 gtcgaagaatatttataacttaattgaacaaaaaggtactgaatt 52  Q
    |||||| | ||||||||||||||||||||||||||||||||||||    
T  11635 gtcgaatagtatttataacttaattgaacaaaaaggtactgaatt 11591  T

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Target: scaffold0007 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 80 - 254
Target Start/End: Complemental strand, 275379 - 275179
Alignment:
Q  80 tattcttctttt-cttggcttttatacacgccctctatgatataagctcctccacgtgtgccaaatttttaggctttctttactctcattcgctggac-- 176  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||      
T  275379 tattcttcttttacttagcttttatacacgccctctatgatataagctcctccacgtcttccaaatttttaggctttctttactctcattcactggacct 275280  T
Q  177 ---ctttgctgcattagt--------------------gtgcattgagtttcttctttgtggcaaatgcatcaaattttggcaagtaatgaacaaatgtg 253  Q
       |||||| ||||||||                    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  275279 ttcctttgccgcattagttgtagtgaaagtaggaccttgtgcattgagtttcttctttgtggcaaatgcatcaaatttcggcaagtaatgaacaaatgtg 275180  T
Q  254 g 254  Q
    |    
T  275179 g 275179  T

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Target: scaffold0007; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 276107 - 276071
Alignment:
Q  16 atatttataacttaattgaacaaaaaggtactgaatt 52  Q
    ||||||||||||||||||||||||||||||| |||||    
T  276107 atatttataacttaattgaacaaaaaggtaccgaatt 276071  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 46670888 - 46670933
Alignment:
Q  7 tgtcgaagaatatttataacttaattgaacaaaaaggtactgaatt 52  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||    
T  46670888 tgtcgaataatatttataacttaattgaacaaaaaggtactgaatt 46670933  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 53437489 - 53437444
Alignment:
Q  7 tgtcgaagaatatttataacttaattgaacaaaaaggtactgaatt 52  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||    
T  53437489 tgtcgaatagtatttataacttaattgaacaaaaaggtactgaatt 53437444  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 53438922 - 53438877
Alignment:
Q  7 tgtcgaagaatatttataacttaattgaacaaaaaggtactgaatt 52  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||    
T  53438922 tgtcgaatagtatttataacttaattgaacaaaaaggtactgaatt 53438877  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 55584698 - 55584743
Alignment:
Q  7 tgtcgaagaatatttataacttaattgaacaaaaaggtactgaatt 52  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||    
T  55584698 tgtcgaatagtatttataacttaattgaacaaaaaggtactgaatt 55584743  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 16420711 - 16420666
Alignment:
Q  7 tgtcgaagaatatttataacttaattgaacaaaaaggtactgaatt 52  Q
    ||||||| ||||||| | ||||||||||||||||||||||||||||    
T  16420711 tgtcgaataatatttgtgacttaattgaacaaaaaggtactgaatt 16420666  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 91
Target Start/End: Original strand, 55585393 - 55585430
Alignment:
Q  54 gttctcctctcgttttccaaccctcgtattcttctttt 91  Q
    |||||||||||| |||||||||||||||||||||||||    
T  55585393 gttctcctctcggtttccaaccctcgtattcttctttt 55585430  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 28634285 - 28634240
Alignment:
Q  7 tgtcgaagaatatttataacttaattgaacaaaaaggtactgaatt 52  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||    
T  28634285 tgtcgaataatatttataacttaattgaacaaaaaggtactgaatt 28634240  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 41363519 - 41363474
Alignment:
Q  7 tgtcgaagaatatttataacttaattgaacaaaaaggtactgaatt 52  Q
    ||||||| | ||||||||||||||| ||||||||||||||| ||||    
T  41363519 tgtcgaatattatttataacttaatcgaacaaaaaggtacttaatt 41363474  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 44679476 - 44679521
Alignment:
Q  7 tgtcgaagaatatttataacttaattgaacaaaaaggtactgaatt 52  Q
    ||||||| | ||||||||||||||||||||||||| || |||||||    
T  44679476 tgtcgaatagtatttataacttaattgaacaaaaatgtgctgaatt 44679521  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 57
Target Start/End: Original strand, 11773233 - 11773283
Alignment:
Q  7 tgtcgaagaatatttataacttaattgaacaaaaaggtactgaattcgttc 57  Q
    ||||||| | |||||||||||||||||||||||||||||||||||| ||||    
T  11773233 tgtcgaatagtatttataacttaattgaacaaaaaggtactgaatttgttc 11773283  T

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Target: scaffold0144 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0144
Description:

Target: scaffold0144; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 39782 - 39817
Alignment:
Q  17 tatttataacttaattgaacaaaaaggtactgaatt 52  Q
    ||||||||||||||||||||||||||||||||||||    
T  39782 tatttataacttaattgaacaaaaaggtactgaatt 39817  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 9953658 - 9953703
Alignment:
Q  7 tgtcgaagaatatttataacttaattgaacaaaaaggtactgaatt 52  Q
    |||||||  |||||||||||||||||||||||||||||||| ||||    
T  9953658 tgtcgaatgatatttataacttaattgaacaaaaaggtactcaatt 9953703  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 23410149 - 23410104
Alignment:
Q  7 tgtcgaagaatatttataacttaattgaacaaaaaggtactgaatt 52  Q
    ||||||| | |||||||||||||||||||||||||||| |||||||    
T  23410149 tgtcgaatagtatttataacttaattgaacaaaaaggtcctgaatt 23410104  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 40
Target Start/End: Complemental strand, 25138123 - 25138090
Alignment:
Q  7 tgtcgaagaatatttataacttaattgaacaaaa 40  Q
    ||||||| ||||||||||||||||||||||||||    
T  25138123 tgtcgaataatatttataacttaattgaacaaaa 25138090  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 2867994 - 2867949
Alignment:
Q  7 tgtcgaagaatatttataacttaattgaacaaaaaggtactgaatt 52  Q
    ||||||| ||||||| | ||||||||||||||||||||||||||||    
T  2867994 tgtcgaataatatttgtgacttaattgaacaaaaaggtactgaatt 2867949  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 2880453 - 2880408
Alignment:
Q  7 tgtcgaagaatatttataacttaattgaacaaaaaggtactgaatt 52  Q
    ||||||| ||||||| | ||||||||||||||||||||||||||||    
T  2880453 tgtcgaataatatttgtgacttaattgaacaaaaaggtactgaatt 2880408  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 41586425 - 41586380
Alignment:
Q  7 tgtcgaagaatatttataacttaattgaacaaaaaggtactgaatt 52  Q
    ||||||| ||||||| | ||||||||||||||||||||||||||||    
T  41586425 tgtcgaataatatttttgacttaattgaacaaaaaggtactgaatt 41586380  T

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