View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15839_low_2 (Length: 517)
Name: NF15839_low_2
Description: NF15839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15839_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 137; Significance: 3e-71; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 27 - 196
Target Start/End: Original strand, 5567199 - 5567370
Alignment:
| Q |
27 |
atacatgagtcttttagattatattggtcatagctt--tgtgcttgacaaggaataatagaaattgagtgtttcatagatcaatcatatgagagtgttgg |
124 |
Q |
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| T |
5567199 |
atacatgaatcttttagattatataggtcatagcttggtgtggttgaaaaggaataatagaaatcgagtgtttcatagatcaatcatatgagagtgttgg |
5567298 |
T |
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| Q |
125 |
aagaaagggtttgatttgtgaaatttgggaaggaatagagaagggaagagagaagaaattagagagtttatg |
196 |
Q |
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| T |
5567299 |
aagaaagggtttgatttgtgaaatttgggaaggaatagagaagggaagagagaagaaattagatagtttatg |
5567370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 368 - 496
Target Start/End: Original strand, 5567909 - 5568037
Alignment:
| Q |
368 |
gaattattcttaacactcttccttaattcatgtttgttgaattcaccatgtccatcatgcttctcaatacttcaatacttcaatcgttagtgactttgtc |
467 |
Q |
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| T |
5567909 |
gaattattcttaacactcttccttaattcatgtttgttgaattcaccatgtccatcatgcttctcaatacttcaatacttcaatcgttagtgacattgtc |
5568008 |
T |
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| Q |
468 |
attgcatttgcaatttaaaacatttgtct |
496 |
Q |
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| T |
5568009 |
attgcatttgcaatttaaaacatttgtct |
5568037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 189 - 307
Target Start/End: Original strand, 5567729 - 5567847
Alignment:
| Q |
189 |
agtttatgagggaaattgaacttgtatattattttggaaaatctctattacaaatatacatgatggcttagctagttatagcctctattacttgctatgc |
288 |
Q |
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| T |
5567729 |
agtttatgagggaaattgaacttgtatattattttggaaaatctctattacaaatatacatgatggcttagctacttatagcctctattacttgctatgc |
5567828 |
T |
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| Q |
289 |
aagttacttgttgttcaag |
307 |
Q |
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| T |
5567829 |
aagttacttgttgttcaag |
5567847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 372 - 435
Target Start/End: Complemental strand, 21549327 - 21549260
Alignment:
| Q |
372 |
tattcttaacactcttccttaattcatgtttgttgaatt----caccatgtccatcatgcttctcaat |
435 |
Q |
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| T |
21549327 |
tattcttaacactcttccttaattcatgttttttgaattcacccaccatgcccatcatgcttctcaat |
21549260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 378 - 422
Target Start/End: Complemental strand, 4928077 - 4928033
Alignment:
| Q |
378 |
taacactcttccttaattcatgtttgttgaattcaccatgtccat |
422 |
Q |
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| T |
4928077 |
taacactcttccttaattcatgtttgttgaattcaccatgcccat |
4928033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 379 - 431
Target Start/End: Original strand, 24413070 - 24413122
Alignment:
| Q |
379 |
aacactcttccttaattcatgtttgttgaattcaccatgtccatcatgcttct |
431 |
Q |
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| T |
24413070 |
aacactcttccttaattcatgtttgctgaatccaccatgcccatcattcttct |
24413122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 379 - 431
Target Start/End: Complemental strand, 8531613 - 8531561
Alignment:
| Q |
379 |
aacactcttccttaattcatgtttgttgaattcaccatgtccatcatgcttct |
431 |
Q |
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| T |
8531613 |
aacactcttccttaattcatgtttgttgaatcaaccatgcccatcattcttct |
8531561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 185 - 230
Target Start/End: Original strand, 26344931 - 26344976
Alignment:
| Q |
185 |
agagagtttatgagggaaattgaacttgtatattattttggaaaat |
230 |
Q |
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|||||||||||| | |||||||| |||||||||||||||||||||| |
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| T |
26344931 |
agagagtttatgggagaaattgagcttgtatattattttggaaaat |
26344976 |
T |
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