View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15839_low_20 (Length: 239)
Name: NF15839_low_20
Description: NF15839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15839_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 18422238 - 18422459
Alignment:
| Q |
1 |
tgaccatgaaggacaccctcagatgagttttcatctcattgaaatggatatttgaagagggatcttgttaacctctgtcatattcttatcataatactat |
100 |
Q |
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| T |
18422238 |
tgaccatgaaggacaccctcatatgagttttcacctcattgaaatggatatttgaagagggatcttgttaccctctgtcatattcttatcataatagtat |
18422337 |
T |
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| Q |
101 |
ttgttattttcttattctcaactaaaacatgtattcggaaaatatttgtcatcaaatcgattggnnnnnnnggacagaagaatagaagaataaaattgca |
200 |
Q |
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| T |
18422338 |
ttgttattttcttattctcaactaaaacatgtattcggaaaatatttgtcatcaaatcgattggaaaaaaaggacagaagaatagaagaataaaattgca |
18422437 |
T |
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| Q |
201 |
aggagaaattaatccacctaaa |
222 |
Q |
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| T |
18422438 |
aggagaaattaatccacctaaa |
18422459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 3 - 164
Target Start/End: Original strand, 18435751 - 18435915
Alignment:
| Q |
3 |
accatgaaggacaccctcagatgagttttcatctcattgaaatggatatttgaagagggatctt---gttaacctctgtcatattcttatcataatacta |
99 |
Q |
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| T |
18435751 |
accatgaaggacacccttatatgagttttcacctcattgaaatggatatttgacgagggatcttcttgttaacctctgtcatattcttatcataatagta |
18435850 |
T |
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| Q |
100 |
tttgttattttcttattctcaactaaaacatgtattcggaaaatatttgtcatcaaatcgattgg |
164 |
Q |
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| T |
18435851 |
tttgttattttcttattctcaactaaaacatgtattaggaaaatatttgtcatcaaattgattgg |
18435915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 121 - 218
Target Start/End: Original strand, 18435925 - 18436022
Alignment:
| Q |
121 |
actaaaacatgtattcggaaaatatttgtcatcaaatcgattggnnnnnnnggacagaagaatagaagaataaaattgcaaggagaaattaatccacc |
218 |
Q |
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| T |
18435925 |
actaaaacatgtattaggaaaatatttctgatcaaattgattgaaaaaaaaggacagaagaatagaagactaaaattgcaaggagaaattaatccacc |
18436022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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