View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15839_low_21 (Length: 237)
Name: NF15839_low_21
Description: NF15839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15839_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 13308643 - 13308439
Alignment:
| Q |
18 |
tattgtccactgcttccaaccttcttccaatgtccttcaaattttggtcaatcaaccaagcaagattattcacatcaaccattgacatattgttgtccac |
117 |
Q |
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| T |
13308643 |
tattgtccactgcttccaaccttcttccaatgtccttcaaattttggtcaatcaaccaagcaagattattcacatcaaccattgacatattgttgtccac |
13308544 |
T |
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| Q |
118 |
aattttccctgcattcaaacattgaaacattagaagggccatctctttctgcttgttgtctttttgttgctttttcacctgctctttagccttcatcacc |
217 |
Q |
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| T |
13308543 |
aattttccctgcattcaggcattgaaacattagaagggctatctctttctgcttgttgtctttttgttgctttttcacctgctctttagccttcatcacc |
13308444 |
T |
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| Q |
218 |
ctttg |
222 |
Q |
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||||| |
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| T |
13308443 |
ctttg |
13308439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 50 - 147
Target Start/End: Complemental strand, 15076107 - 15076010
Alignment:
| Q |
50 |
tccttcaaattttggtcaatcaaccaagcaagattattcacatcaaccattgacatattgttgtccacaattttccctgcattcaaacattgaaacat |
147 |
Q |
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| T |
15076107 |
tccttcaaattttggtcaatcaaccaagcaagatcattcaaatcaatcattgacatatcattgtgcacaatttcttcagcattaatacattgaaacat |
15076010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 15073346 - 15073261
Alignment:
| Q |
18 |
tattgtccactgcttccaaccttcttccaatgtccttcaaattttggtcaatcaaccaagcaagattattcacatcaaccattgac |
103 |
Q |
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| T |
15073346 |
tattatccacttcttccaatcttctatgaatatccttcaaattttgatcaatcaaccaagcaagaacattcaaatcaatcattgac |
15073261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 11096236 - 11096184
Alignment:
| Q |
31 |
ttccaaccttcttccaatgtccttcaaattttggtcaatcaaccaagcaagat |
83 |
Q |
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|||||| | ||| ||||||||||||||||| |||||||||||||||| ||||| |
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| T |
11096236 |
ttccaaacgtctaccaatgtccttcaaattatggtcaatcaaccaagaaagat |
11096184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 83
Target Start/End: Complemental strand, 11106912 - 11106879
Alignment:
| Q |
50 |
tccttcaaattttggtcaatcaaccaagcaagat |
83 |
Q |
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||||||||||| |||||||||||||||||||||| |
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| T |
11106912 |
tccttcaaattgtggtcaatcaaccaagcaagat |
11106879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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