View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15839_low_4 (Length: 419)
Name: NF15839_low_4
Description: NF15839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15839_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 18 - 407
Target Start/End: Complemental strand, 45616709 - 45616320
Alignment:
| Q |
18 |
cctagaacgtgataaccttagaccacgtagttttccattcaaagacttcacccaaatgcaacgttttcctactctcatcatccttttacttgttaacttt |
117 |
Q |
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| T |
45616709 |
cctagaacgtgataaccttagaccacgtagttttccattcaaagacttcacccaaatgcaacgttttcctactctcatcatccttttacttgttaacttt |
45616610 |
T |
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| Q |
118 |
tcatagccaaatctcatgcgtttgctagccaaatactgcaaactcatttgcaacatggtactgacagtgttaattagtggttttaatgaacaagcaagag |
217 |
Q |
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| T |
45616609 |
tcatagccaaatctcatgcgtttggtagccaaatactgcaaactcatttgcaacatggtactgacagtgttaattagtgg-tttaatgaacaagcaagag |
45616511 |
T |
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| Q |
218 |
ctgaattaaacatcttatatagcacattgttgccaccatgttccaatgagtagagacaaaattacatcattttaaaacatggaaacacatggttataaat |
317 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |
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| T |
45616510 |
ctgaattaaacatcttatataacacattgttgccaccatgttccaatgagtagagacaaaattacatcatttt-aaacatgaaaacacatggttataaat |
45616412 |
T |
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| Q |
318 |
caatcacgttgtatattcagagtctataacttgttcggttattcttagaaatccaaattaat--tagttggtgggtaaaggaatatttgatg |
407 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
45616411 |
caatcacgttgtatattcagagtctataacttgttctgttattcttagaaatccaaattaattatagttggtgggtaaaggaatatttgatg |
45616320 |
T |
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