View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15839_low_5 (Length: 400)

Name: NF15839_low_5
Description: NF15839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15839_low_5
NF15839_low_5
[»] scaffold0049 (1 HSPs)
scaffold0049 (32-394)||(39253-39615)
[»] scaffold0007 (1 HSPs)
scaffold0007 (32-394)||(274739-275101)
[»] chr2 (2 HSPs)
chr2 (32-394)||(44680070-44680432)
chr2 (32-243)||(41362344-41362556)
[»] scaffold0434 (1 HSPs)
scaffold0434 (46-385)||(10276-10615)
[»] chr4 (5 HSPs)
chr4 (32-383)||(55585689-55586041)
chr4 (53-255)||(3216898-3217104)
chr4 (67-255)||(46672978-46673165)
chr4 (32-162)||(53435866-53435996)
chr4 (46-214)||(16419591-16419759)
[»] chr7 (4 HSPs)
chr7 (31-252)||(9954716-9954937)
chr7 (32-212)||(23689166-23689348)
chr7 (32-172)||(23690399-23690540)
chr7 (46-214)||(23409011-23409179)
[»] chr3 (6 HSPs)
chr3 (53-228)||(558907-559084)
chr3 (53-174)||(22833522-22833645)
chr3 (229-341)||(467876-467988)
chr3 (143-215)||(467989-468061)
chr3 (117-255)||(11776957-11777096)
chr3 (32-71)||(11777096-11777136)
[»] chr6 (5 HSPs)
chr6 (46-341)||(35022913-35023209)
chr6 (32-174)||(33353260-33353402)
chr6 (32-162)||(2867392-2867521)
chr6 (32-162)||(2879180-2879309)
chr6 (78-174)||(3343502-3343596)
[»] chr8 (1 HSPs)
chr8 (53-174)||(5592417-5592540)
[»] chr1 (2 HSPs)
chr1 (46-150)||(12179110-12179214)
chr1 (31-69)||(1935377-1935415)


Alignment Details
Target: scaffold0049 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 32 - 394
Target Start/End: Complemental strand, 39615 - 39253
Alignment:
Q  32 tgataatgtctcattagttaatatttttacagtcaattttaagtagttttcagttaagttgaatcaattcagagtgtttttataatcaaactgagcaaaa 131  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  39615 tgataatgtctcattaattaatatttttacagtcaattttaagtagttttcagttaagttgaatcaattcagagtgtttttatagtcaaactgcgcaaaa 39516  T
Q  132 aagaggattttgaaaatatccagttgtgttagtcattcttgttctaattctctctaacctaacaaactcttggagtttttgttgtttatttatttttata 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  39515 aagaggattttgaaaatatccagttgtgttagtcattcttgttctaattctctctaacctaacaaactcttggagtttttgttctttatttatatttata 39416  T
Q  232 ggtcgagttgataaagtgaacttagtttcgagaagtcatgagtggttaattcaagcacggaatcaatgttttgaagcataaaagaccgatgagcaatgtt 331  Q
    ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  39415 ggttgagttcataaagtgaacttagtttcgagaagtcatgagtggttaattcaagcacggaatcaatgttttgaagcataaaacactgatgagcaatgtt 39316  T
Q  332 caacacgagacaaatttccagcaagtgcaaaatcattttctctactagctttttgatgatgtc 394  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||    
T  39315 caacacgagacaaatttccagcaactgcaaaaccattttctctactagctttttgttgatgtc 39253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 32 - 394
Target Start/End: Original strand, 274739 - 275101
Alignment:
Q  32 tgataatgtctcattagttaatatttttacagtcaattttaagtagttttcagttaagttgaatcaattcagagtgtttttataatcaaactgagcaaaa 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||    
T  274739 tgataatgtctcattagttaatatttttacagtcaattttaagtagttttcagttaagttgaatcaattcagagtgcttttatagtcaaaccgagcaaaa 274838  T
Q  132 aagaggattttgaaaatatccagttgtgttagtcattcttgttctaattctctctaacctaacaaactcttggagtttttgttgtttatttatttttata 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||    
T  274839 aagaggattttgaaaatatccagttgtgttagtcattcttgttctaattctctctaacctaacaaactcttggagtttttgttctttatttattttctta 274938  T
Q  232 ggtcgagttgataaagtgaacttagtttcgagaagtcatgagtggttaattcaagcacggaatcaatgttttgaagcataaaagaccgatgagcaatgtt 331  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||| |||||||    
T  274939 ggttgagttgataaagtgaacttagtttcgagaagtcatgagtggttaattcaagcacagaatcaatgttgtgaagcataaaagaacgatgaccaatgtt 275038  T
Q  332 caacacgagacaaatttccagcaagtgcaaaatcattttctctactagctttttgatgatgtc 394  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  275039 caacacaagacaaatttccagcaagtgcaaaaccattttctctactagctttttgttgatgtc 275101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 32 - 394
Target Start/End: Complemental strand, 44680432 - 44680070
Alignment:
Q  32 tgataatgtctcattagttaatatttttacagtcaattttaagtagttttcagttaagttgaatcaattcagagtgtttttataatcaaactgagcaaaa 131  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||| |||||||||||||||    
T  44680432 tgataatgtctcattagttagtatttttacagtcaattttaagtagttttcagttaagttgaatcaattcaaagtacttttatagtcaaactgagcaaaa 44680333  T
Q  132 aagaggattttgaaaatatccagttgtgttagtcattcttgttctaattctctctaacctaacaaactcttggagtttttgttgtttatttatttttata 231  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  44680332 aagaggattttgaaaatatccagctgtgttagtcattcttgttctaactctctctaacctaacaaactcttggagtttttgttctttatttatttttata 44680233  T
Q  232 ggtcgagttgataaagtgaacttagtttcgagaagtcatgagtggttaattcaagcacggaatcaatgttttgaagcataaaagaccgatgagcaatgtt 331  Q
    ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  44680232 ggttgagttgataaagtgaacttaatttcgagaagtcatgagtggttaattcaagcacggaatcaatgttttgaagcataaaggaccgatgagcaatgtt 44680133  T
Q  332 caacacgagacaaatttccagcaagtgcaaaatcattttctctactagctttttgatgatgtc 394  Q
    |||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||    
T  44680132 caacacgagacaaatttccagcaagtgcaaaaccattttctctaatagctttttgttgatgtc 44680070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 32 - 243
Target Start/End: Original strand, 41362344 - 41362556
Alignment:
Q  32 tgataatgtctcattagttaatatttttacagtcaattttaagtagttttcagttaagttgaatcaattcagagtgtttttataatcaaactgagc-aaa 130  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||  ||||||| ||| |  ||| |||| |||    
T  41362344 tgataatgtctcattagttagtatttttacggtcaattttaagtagttttcagttaagttgagtcaattcatggtgttttaatagtttaaccgagcaaaa 41362443  T
Q  131 aaagaggattttgaaaatatccagttgtgttagtcattcttgttctaattctctctaacctaacaaactcttggagtttttgttgtttatttatttttat 230  Q
    |||||||||||||||||||| | ||||| |||||||| ||| ||  ||||||||||||||||||||  | ||||||||||||||   |||||||||||||    
T  41362444 aaagaggattttgaaaatattcggttgtattagtcatgcttatttaaattctctctaacctaacaattttttggagtttttgttcgctatttatttttat 41362543  T
Q  231 aggtcgagttgat 243  Q
    |||| ||||||||    
T  41362544 aggttgagttgat 41362556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0434 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: scaffold0434
Description:

Target: scaffold0434; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 46 - 385
Target Start/End: Original strand, 10276 - 10615
Alignment:
Q  46 tagttaatatttttacagtcaattttaagtagttttcagttaagttgaatcaattcagagtgtttttataatcaaactgagcaaaaaagaggattttgaa 145  Q
    |||||| |||||||||||||| || ||| ||||||| |||||||||||||||||||| |||| ||||||| |||||||||||||||||||| ||||||||    
T  10276 tagttagtatttttacagtcagttctaaatagttttaagttaagttgaatcaattcaaagtgcttttatagtcaaactgagcaaaaaagagaattttgaa 10375  T
Q  146 aatatccagttgtgttagtcattcttgttctaattctctctaacctaacaaactcttggagtttttgttgtttatttatttttataggtcgagttgataa 245  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||    
T  10376 aatatccagttatgttagtcattcttgttctaattctctctaacctaacaaactcttggagtttttgttctttatttatttttataggttgagttgacaa 10475  T
Q  246 agtgaacttagtttcgagaagtcatgagtggttaattcaagcacggaatcaatgttttgaagcataaaagaccgatgagcaatgttcaacacgagacaaa 345  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  10476 agtgaacttagtttcgagaagtcatgagtggttaattcaagcacgaaatcaatgttgtgaagcatgaaagaccgatgagcaatgttcaacacgagacaaa 10575  T
Q  346 tttccagcaagtgcaaaatcattttctctactagcttttt 385  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  10576 tttccagcaagtgcaaaaccattttctctactagcttttt 10615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 32 - 383
Target Start/End: Complemental strand, 55586041 - 55585689
Alignment:
Q  32 tgataatgtctcattagttaatatttttacagtcaattttaagtagttttcagttaagttgaatcaattcagagtgtttttataatcaaactgagcaaaa 131  Q
    |||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||| ||||||||||| ||||||| ||||| |||||||||    
T  55586041 tgataatgtctcattagttagtatttttacggtcaattttaagtaattttcagttaagttgaattaattcagagtgcttttatagtcaaattgagcaaaa 55585942  T
Q  132 aagaggattttgaaaatatccagttgtgttagtcattcttgttctaattctctctaacctaacaaactcttggagtttttgttgtttatttattttt-at 230  Q
    |||||||||||||||||||| |  |||||| || ||||||||| |||||||||||||||||||||| || |||||||| || | | ||||||||||| |     
T  55585941 aagaggattttgaaaatatctaactgtgttggtaattcttgttttaattctctctaacctaacaaattcgtggagtttgtg-tctctatttatttttgac 55585843  T
Q  231 aggtcgagttgataaagtgaacttagtttcgagaagtcatgagtggttaattcaagcacggaatcaatgttttgaagcataaaagaccgatgagcaatgt 330  Q
    |||| |||||||||| ||||||||||||||||  |||||||| ||||||||||||||||| |||| | |||||||||||| | |||||||||||||||||    
T  55585842 aggttgagttgataacgtgaacttagtttcgaacagtcatgaatggttaattcaagcacgtaatcgaagttttgaagcatgagagaccgatgagcaatgt 55585743  T
Q  331 tcaacacgagac-aaatttccagcaagtgcaaaatcattttctctactagcttt 383  Q
    |||||||||||| |||||| || |||||||| || |||||||||||||||||||    
T  55585742 tcaacacgagacaaaattttcaacaagtgcataaccattttctctactagcttt 55585689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 53 - 255
Target Start/End: Complemental strand, 3217104 - 3216898
Alignment:
Q  53 tatttttacagtcaattttaagtagttttcagttaagttgaatcaattcagagtgtttttataatcaaactgagcaa---aaaagaggattttgaaaata 149  Q
    |||||||||| | | |||||||||||||| ||||||||||||||||||||||||| ||||| | |||||||||||||   ||||||||||||||||||||    
T  3217104 tatttttacatttatttttaagtagttttaagttaagttgaatcaattcagagtgcttttaaagtcaaactgagcaaaaaaaaagaggattttgaaaata 3217005  T
Q  150 tccagttgtgttagtcattcttg-ttctaattctctctaacctaacaaactcttggagtttttgttgtttatttatttttataggtcgagttgataaagt 248  Q
    |||| |||||||||| ||||||| || || |||||||||||| |||||| | |||||||||||||| | ||||  |||||| |||| |||||||  ||||    
T  3217004 tccaattgtgttagttattcttgtttatagttctctctaaccaaacaaatttttggagtttttgttctctattattttttagaggttgagttgaggaagt 3216905  T
Q  249 gaactta 255  Q
    |||||||    
T  3216904 gaactta 3216898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 67 - 255
Target Start/End: Complemental strand, 46673165 - 46672978
Alignment:
Q  67 attttaagtagttttcagttaagttgaatcaattcagagtgtttttataatcaaactgagcaaaaaagaggattttgaaaatatccagttgtgttagtca 166  Q
    |||| |||||||||| ||||||||||||||| || |||||| ||||| | | || |||||||||| |||||||| ||||||||| ||||| | ||  | |    
T  46673165 atttcaagtagttttgagttaagttgaatcattttagagtgcttttaaagttaagctgagcaaaatagaggattgtgaaaatattcagttatattgatta 46673066  T
Q  167 ttcttgttctaattctctctaacctaacaaactcttggagtttttgttgtttatttatttttataggtcgagttgataaagtgaactta 255  Q
    || |  |||||||| ||||||||  |||||| |||||||||||||||| | || |||||||| ||||| || |||||||||||||||||    
T  46673065 ttttgtttctaattgtctctaactaaacaaattcttggagtttttgttctcta-ttatttttttaggttgaattgataaagtgaactta 46672978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 32 - 162
Target Start/End: Original strand, 53435866 - 53435996
Alignment:
Q  32 tgataatgtctcattagttaatatttttacagtcaattttaagtagttttcagttaagttgaatcaattcagagtgt-ttttataatcaaactgagcaaa 130  Q
    ||||||||||||  |||||| |||||||| ||||| |||||||||||||| |||||| ||||||||||||| ||||| ||||  | |||||||||| | |    
T  53435866 tgataatgtctctatagttagtatttttagagtcatttttaagtagttttaagttaaattgaatcaattcaaagtgtattttggagtcaaactgag-ata 53435964  T
Q  131 aaagaggattttgaaaatatccagttgtgtta 162  Q
    |||||||||||| |||||||  ||||||||||    
T  53435965 aaagaggattttaaaaatatttagttgtgtta 53435996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 46 - 214
Target Start/End: Original strand, 16419591 - 16419759
Alignment:
Q  46 tagttaatatttttacagtcaattttaagtagttttcagttaagttgaatcaattcagagtgtttttataatcaaactgagcaaaaaagaggattttgaa 145  Q
    |||||| |||||||| ||| | |||||||||||||| |||| |||||||| |||||| |||| ||||||| ||||||||| | |||||||  |||||  |    
T  16419591 tagttagtatttttatagttatttttaagtagttttaagttgagttgaataaattcaaagtgcttttatagtcaaactgaac-aaaaagataattttaga 16419689  T
Q  146 aatatccagttgtgttagtcattcttg-ttctaattctctctaacctaacaaactcttggagtttttgtt 214  Q
    ||| | |||| |||||| |||||  || ||| |||||||  ||||| || ||| ||||||||||||||||    
T  16419690 aatgttcagtcgtgttattcatttgtgtttcaaattctccttaaccaaataaattcttggagtttttgtt 16419759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 146; Significance: 8e-77; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 31 - 252
Target Start/End: Complemental strand, 9954937 - 9954716
Alignment:
Q  31 atgataatgtctcattagttaatatttttacagtcaattttaagtagttttcagttaagttgaatcaattcagagtgtttttataatcaaactgagcaaa 130  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||| || ||||||| ||||||||||||||    
T  9954937 atgataatgtctcattagttagtatttttacagtcaattttaagtagttttcagtttagttgaattaattcagaatgcttttatagtcaaactgagcaaa 9954838  T
Q  131 aaagaggattttgaaaatatccagttgtgttagtcattcttgttctaattctctctaacctaacaaactcttggagtttttgttgtttatttatttttat 230  Q
    ||||| |||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | | ||| |||||||||    
T  9954837 aaagatgattttaaaaatatccaactgtgttagtcattcttgttctaattctctctaacctaacaaattcttggagtttttggtctctatctatttttat 9954738  T
Q  231 aggtcgagttgataaagtgaac 252  Q
    |||  |||||||  ||||||||    
T  9954737 aggctgagttgaagaagtgaac 9954716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 32 - 212
Target Start/End: Complemental strand, 23689348 - 23689166
Alignment:
Q  32 tgataatgtctcattagttaatatttttacagtcaatttt-aagtagttttcagttaagttgaatcaattcagagtgtttttataatcaaactgagcaaa 130  Q
    ||||||||||||| |||||| ||||||||| |||  |||| |||||||||||||| ||||||| |||||  || || |||||||| ||||||| ||||||    
T  23689348 tgataatgtctcaatagttagtatttttacggtcgttttttaagtagttttcagtaaagttgagtcaataaagggtatttttatagtcaaactaagcaaa 23689249  T
Q  131 aaagaggattttgaaaatatccagttgtgttagtcattcttgtt-ctaattctctctaacctaacaaactcttggagtttttg 212  Q
    ||||||||||||||||||||| |||||| || || ||||||||| |||||| ||||||||  |||||| ||||||||||||||    
T  23689248 aaagaggattttgaaaatatcaagttgtattggttattcttgttgctaattatctctaactaaacaaattcttggagtttttg 23689166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 32 - 172
Target Start/End: Complemental strand, 23690540 - 23690399
Alignment:
Q  32 tgataatgtctcattagttaatatttttacagtcaatttt-aagtagttttcagttaagttgaatcaattcagagtgtttttataatcaaactgagcaaa 130  Q
    ||||||||||||| |||||| ||||||||| |||  |||| |||||||||||||| ||||||| |||||  || ||||||||||| ||||||| ||||||    
T  23690540 tgataatgtctcaatagttagtatttttacggtcgttttttaagtagttttcagtaaagttgagtcaataaagggtgtttttatagtcaaactaagcaaa 23690441  T
Q  131 aaagaggattttgaaaatatccagttgtgttagtcattcttg 172  Q
    ||||||||||||||||||||| |||||| || || |||||||    
T  23690440 aaagaggattttgaaaatatcaagttgtattggttattcttg 23690399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 46 - 214
Target Start/End: Original strand, 23409011 - 23409179
Alignment:
Q  46 tagttaatatttttacagtcaattttaagtagttttcagttaagttgaatcaattcagagtgtttttataatcaaactgagcaaaaaagaggattttgaa 145  Q
    |||||| |||||||| ||||| |||||||||||||| ||||||||||||| ||||||||||  ||||| | ||||||  | ||||   ||| ||||| ||    
T  23409011 tagttagtatttttatagtcatttttaagtagttttaagttaagttgaattaattcagagtacttttaaagtcaaacccaacaaagttgagaattttaaa 23409110  T
Q  146 aatatccagttgtgttagtcattcttgttctaattctctctaacctaacaaactcttggagtttttgtt 214  Q
    ||||| ||||||| || || ||| |  ||||| || ||||||||| |||||| | ||||| ||| ||||    
T  23409111 aatattcagttgtattggttattttgtttctatttgtctctaaccaaacaaattgttggattttgtgtt 23409179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 9e-46; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 53 - 228
Target Start/End: Original strand, 558907 - 559084
Alignment:
Q  53 tatttttacagtcaattttaagtagttttcagttaagttgaatcaattcagagtgtttttataatcaaactgagcaa-aaaagaggattttgaaaatatc 151  Q
    |||||||||| ||| |||||||||||||| ||||||||||||||||||||||||| ||||| | ||||||||||||| ||||||||||||||||||||||    
T  558907 tatttttacattcatttttaagtagttttaagttaagttgaatcaattcagagtgcttttaaagtcaaactgagcaagaaaagaggattttgaaaatatc 559006  T
Q  152 cagttgtgttagtcattcttg-ttctaattctctctaacctaacaaactcttggagtttttgttgtttatttattttt 228  Q
    || ||||||| || ||||||| || || |||||||||||| |||||| | |||||||||||||| | |||| ||||||    
T  559007 caattgtgttggttattcttgtttatagttctctctaaccaaacaaattgttggagtttttgttctctattcattttt 559084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 53 - 174
Target Start/End: Complemental strand, 22833645 - 22833522
Alignment:
Q  53 tatttttacagtcaattttaagtagttttcagttaagttgaatcaattcagagtgtttttataatcaaactgagcaa--aaaagaggattttgaaaatat 150  Q
    |||||||||| ||| |||||||||||||| ||||||||||||||||||| ||||| ||||| | |||||||||||||  |||||||||||||||||||||    
T  22833645 tatttttacattcatttttaagtagttttaagttaagttgaatcaattctgagtgcttttaaagtcaaactgagcaaaaaaaagaggattttgaaaatat 22833546  T
Q  151 ccagttgtgttagtcattcttgtt 174  Q
    ||| ||||||| || |||||||||    
T  22833545 ccaattgtgttggttattcttgtt 22833522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 229 - 341
Target Start/End: Complemental strand, 467988 - 467876
Alignment:
Q  229 ataggtcgagttgataaagtgaacttagtttcgagaagtcatgagtggttaattcaagcacggaatcaatgttttgaagcataaaagaccgatgagcaat 328  Q
    |||||| || |||||||||||||||||   ||||||||| | || || |||||||||||||  |||  | || ||||||||| |||||||||||| ||||    
T  467988 ataggttgaattgataaagtgaacttacactcgagaagttacgaatgattaattcaagcacataattgaagtcttgaagcatgaaagaccgatgaacaat 467889  T
Q  329 gttcaacacgaga 341  Q
    ||| |||| ||||    
T  467888 gttgaacaagaga 467876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 143 - 215
Target Start/End: Complemental strand, 468061 - 467989
Alignment:
Q  143 gaaaatatccagttgtgttagtcattcttgttctaattctctctaacctaacaaactcttggagtttttgttg 215  Q
    |||||||| ||||||| || || ||| |  |||||||| ||||||||  |||||| |||||||||||||||||    
T  468061 gaaaatattcagttgtattggttattttgtttctaattgtctctaactaaacaaattcttggagtttttgttg 467989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 255
Target Start/End: Complemental strand, 11777096 - 11776957
Alignment:
Q  117 tcaaactgagcaaaaaagaggattttgaaaatatccagttgtgttagtcattcttgtt-ctaattctctctaacctaacaaactcttggagtttttgttg 215  Q
    |||||||||||||||| ||| |||||  |||| | ||||  ||||| |||||  |||| | |||||||  ||||| || ||| |||||||||||||| |     
T  11777096 tcaaactgagcaaaaa-gagaattttagaaatgttcagtcatgttattcatttatgtttcaaattctccttaaccaaataaattcttggagtttttgctc 11776998  T
Q  216 tttattt-atttttataggtcgagttgataaagtgaactta 255  Q
    | ||||| |||||| ||||| |||||||||| |||||||||    
T  11776997 tctatttaatttttttaggttgagttgataatgtgaactta 11776957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 71
Target Start/End: Complemental strand, 11777136 - 11777096
Alignment:
Q  32 tgataatgtctcattagttaata-tttttacagtcaatttt 71  Q
    |||||||||||||||||||| || |||||||||||||||||    
T  11777136 tgataatgtctcattagttagtattttttacagtcaatttt 11777096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 90; Significance: 2e-43; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 46 - 341
Target Start/End: Original strand, 35022913 - 35023209
Alignment:
Q  46 tagttaatatttttacagtcaattttaagtagttttcagttaagttgaatcaattcagagtgtttttataa-tcaaactgagcaaaaaagaggattttga 144  Q
    |||||| |||||||||||||| ||||| |||||||| |||||||||||||||||||||||| |||||  || ||||| |||  | ||||||||||||| |    
T  35022913 tagttagtatttttacagtcatttttatgtagttttaagttaagttgaatcaattcagagtctttttgaaagtcaaattgat-ataaaagaggattttaa 35023011  T
Q  145 aaatatccagttgtgttagtcattcttgttctaattctctctaacctaacaaactcttggagtttttgttgtttatttattttt-ataggtcgagttgat 243  Q
    |||||     ||||||| || ||||||||||||||  | | ||||| |||||| ||||| |||||||||| | ||||  ||||| | |||| ||||| ||    
T  35023012 aaatacttgattgtgttggttattcttgttctaatcatttttaaccaaacaaattcttgaagtttttgttctctattcgtttttgacaggttgagttaat 35023111  T
Q  244 aaagtgaacttagtttcgagaagtcatgagtggttaattcaagcacggaatcaatgttttgaagcataaaagaccgatgagcaatgttcaacacgaga 341  Q
    ||||| |||||| ||| |||||||||| | ||||||||||||||||  |||||| ||| |||||||| ||||| | |||| |||||||||||| ||||    
T  35023112 aaagtaaacttaattttgagaagtcatcaatggttaattcaagcacataatcaaagttgtgaagcatgaaagatcaatgaacaatgttcaacaagaga 35023209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 32 - 174
Target Start/End: Original strand, 33353260 - 33353402
Alignment:
Q  32 tgataatgtctcattagttaatatttttacagtcaattttaagtagttttcagttaagttgaatcaattcagagtgtttttataatcaaactgagcaaaa 131  Q
    ||||||||||||| |||||| |  |||||| |||  |||||| ||||||||||||||||||| |||||  || ||||||||||| ||||||| |||||||    
T  33353260 tgataatgtctcaatagttagtgattttacggtcgtttttaaatagttttcagttaagttgagtcaataaagggtgtttttatagtcaaactaagcaaaa 33353359  T
Q  132 aagaggattttgaaaatatccagttgtgttagtcattcttgtt 174  Q
    ||||||||||||||||| || |||||| || || |||||||||    
T  33353360 aagaggattttgaaaatttcaagttgtattggttattcttgtt 33353402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 32 - 162
Target Start/End: Original strand, 2867392 - 2867521
Alignment:
Q  32 tgataatgtctcattagttaatatttttacagtcaattttaagtagttttcagttaagttgaatcaattcagagtgt-ttttataatcaaactgagcaaa 130  Q
    ||||||||||||  |||||| |||||||| ||||| |||||||||||||| |||||| ||||||||||||| ||||| ||||  | ||||||||||  |     
T  2867392 tgataatgtctctatagttagtatttttagagtcacttttaagtagttttaagttaaattgaatcaattcaaagtgtgttttggagtcaaactgag--at 2867489  T
Q  131 aaagaggattttgaaaatatccagttgtgtta 162  Q
    ||| |||||||| |||||||  ||||||||||    
T  2867490 aaaaaggattttaaaaatatttagttgtgtta 2867521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 32 - 162
Target Start/End: Original strand, 2879180 - 2879309
Alignment:
Q  32 tgataatgtctcattagttaatatttttacagtcaattttaagtagttttcagttaagttgaatcaattcagagtgt-ttttataatcaaactgagcaaa 130  Q
    ||||||||||||  |||||| |||||||| ||||| |||||||||||||| |||||| ||||||||||||| ||||| ||||  | ||||||||||  |     
T  2879180 tgataatgtctctatagttagtatttttagagtcatttttaagtagttttaagttaaattgaatcaattcaaagtgtgttttggagtcaaactgag--at 2879277  T
Q  131 aaagaggattttgaaaatatccagttgtgtta 162  Q
    ||| |||||||| |||||||  ||||||||||    
T  2879278 aaaaaggattttaaaaatatttagttgtgtta 2879309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 78 - 174
Target Start/End: Complemental strand, 3343596 - 3343502
Alignment:
Q  78 ttttcagttaagttgaatcaattcagagtgtttttataatcaaactgagcaaaaaagaggattttgaaaatatccagttgtgttagtcattcttgtt 174  Q
    |||| |||||||||||||||||||| |||||||||| ||||||| |||| |||||||||| ||||| ||||||  |||||| || |||||| |||||    
T  3343596 ttttaagttaagttgaatcaattcatagtgtttttaaaatcaaattgag-aaaaaagagg-ttttggaaatatttagttgttttggtcatttttgtt 3343502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 53 - 174
Target Start/End: Original strand, 5592417 - 5592540
Alignment:
Q  53 tatttttacagtcaattttaagtagttttcagttaagttgaatcaattcagagtgtttttataatcaaactgagc--aaaaaagaggattttgaaaatat 150  Q
    |||||||||| ||| |||||||||||||| ||||||||||||||||||| ||||| ||||| | |||||||||||  |||||||||||||||||||||||    
T  5592417 tatttttacattcatttttaagtagttttaagttaagttgaatcaattctgagtgcttttaaagtcaaactgagcaaaaaaaagaggattttgaaaatat 5592516  T
Q  151 ccagttgtgttagtcattcttgtt 174  Q
    ||| ||||||| || |||||||||    
T  5592517 ccaattgtgttggttattcttgtt 5592540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 46 - 150
Target Start/End: Complemental strand, 12179214 - 12179110
Alignment:
Q  46 tagttaatatttttacagtcaattttaagtagttttcagttaagttgaatcaattcagagtgtttttataatcaaactgagcaaaaaagaggattttgaa 145  Q
    |||||| |||||||||| | | |||||||||||||| |||||||||||||||||| |||||| ||||| ||||||| | |||||||||||||||||||||    
T  12179214 tagttagtatttttacatttatttttaagtagttttaagttaagttgaatcaattgagagtgcttttaaaatcaaattaagcaaaaaagaggattttgaa 12179115  T
Q  146 aatat 150  Q
    |||||    
T  12179114 aatat 12179110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 69
Target Start/End: Complemental strand, 1935415 - 1935377
Alignment:
Q  31 atgataatgtctcattagttaatatttttacagtcaatt 69  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  1935415 atgataatgtctcattagttagtatttttacagtcaatt 1935377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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