View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15839_low_7 (Length: 351)
Name: NF15839_low_7
Description: NF15839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15839_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 2e-86; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 130 - 335
Target Start/End: Original strand, 32764929 - 32765134
Alignment:
| Q |
130 |
caagtaaatccttagttgctttgacaaaaattgttctacatcttaccttcgtgcgattttgaggatccttttcatcttttggagggagcggttctgtagc |
229 |
Q |
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| T |
32764929 |
caagtaaatccttagttgctttaacaaatattattctaaatcttaccttcgtacaattttggggacccttttcatcttttggagggagcggttctgtagc |
32765028 |
T |
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| Q |
230 |
agccctttcaagaagcagtaaaacatcatccaccagtacaaacatgtcattctcaacatgaacaataggtgttggtatttcttcagaatccaacaatttt |
329 |
Q |
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| T |
32765029 |
agccctttcaagaagcagtaaaacatcatccaccagtacaaacatgtcattctcaacgcgaacaataggtgttggtattttttcagaatccaacaatttt |
32765128 |
T |
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| Q |
330 |
ttccat |
335 |
Q |
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|||||| |
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| T |
32765129 |
ttccat |
32765134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 134 - 329
Target Start/End: Original strand, 32754235 - 32754430
Alignment:
| Q |
134 |
taaatccttagttgctttgacaaaaattgttctacatcttaccttcgtgcgattttgaggatccttttcatcttttggagggagcggttctgtagcagcc |
233 |
Q |
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||||||||||||| |||| ||||| ||| ||||| ||||||||||||| |||||||| ||| ||||||||||||||||||| || |||||| |||||||| |
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| T |
32754235 |
taaatccttagttactttaacaaacattattctaaatcttaccttcgtacgattttggggacccttttcatcttttggaggaagtggttctatagcagcc |
32754334 |
T |
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| Q |
234 |
ctttcaagaagcagtaaaacatcatccaccagtacaaacatgtcattctcaacatgaacaataggtgttggtatttcttcagaatccaacaatttt |
329 |
Q |
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| T |
32754335 |
ctttcaagaagtggtaaaatatcgtccaccagtacaaacatatccttctcaacacgaacaataggtgctggtgtttcttcagaatccaacaatttt |
32754430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 174 - 329
Target Start/End: Complemental strand, 16776544 - 16776389
Alignment:
| Q |
174 |
accttcgtgcgattttgaggatccttttcatcttttggagggagcggttctgtagcagccctttcaagaagcagtaaaacatcatccaccagtacaaaca |
273 |
Q |
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||||| ||||||||||||||| | || |||||||| |||||||| |||||| |||||||||| ||||| | || || ||||||||||||||||||||||| |
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| T |
16776544 |
acctttgtgcgattttgaggacctttctcatctttaggagggagaggttctatagcagccctctcaagtaacaatagaacatcatccaccagtacaaaca |
16776445 |
T |
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| Q |
274 |
tgtcattctcaacatgaacaataggtgttggtatttcttcagaatccaacaatttt |
329 |
Q |
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| T |
16776444 |
tatctttctcagcacggacaattggagctggcatttcttcagcgtccaacaatttt |
16776389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 37 - 123
Target Start/End: Original strand, 32754116 - 32754202
Alignment:
| Q |
37 |
ctactcttttgaccaaaacttcatcctctaaaaattcccttccacagttgcatcaataccatcacatttcaattggttcaatgctca |
123 |
Q |
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| T |
32754116 |
ctactcttataaccaaaactttatcctctgaaaatttccttccacggttgtatcaataccatcacatttcaattggctcaatgctca |
32754202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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