View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15839_low_8 (Length: 342)
Name: NF15839_low_8
Description: NF15839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15839_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 5e-90; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 8 - 207
Target Start/End: Complemental strand, 56297328 - 56297129
Alignment:
| Q |
8 |
caacaacaacaaccaacaccgccgttaatcctccaaccaatttgaatcactcaataaccttcaatataaaaaacaagaataaattaaactcataaattca |
107 |
Q |
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| T |
56297328 |
caacagcaacaaccaccaccgccgttaatcctccaaccaatttgaatcaatcaataaccttcaatatgaaaaacaagaataaattaaactcataaattca |
56297229 |
T |
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| Q |
108 |
gaaattgaatcaaatgggtttgaaggaattggattcaaacccctaaattcaatgatctagaagctcgtatctagaacccagaaattcaatgatttaaaac |
207 |
Q |
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| T |
56297228 |
gaaattgaatcaaatggcttggaaggaattggattcaaacccataaattcaatgatctagaagctcgtatctagaacctagaaattcaatgatttaaaac |
56297129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 206
Target Start/End: Complemental strand, 29665111 - 29665057
Alignment:
| Q |
152 |
aaattcaatgatctagaagctcgtatctagaacccagaaattcaatgatttaaaa |
206 |
Q |
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| T |
29665111 |
aaattcaatgatctagaagcttagatctagaacccagaaattcaataattcaaaa |
29665057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 29665252 - 29665213
Alignment:
| Q |
8 |
caacaacaacaaccaacaccgccgttaatcctccaaccaa |
47 |
Q |
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| T |
29665252 |
caacaacaaccaccaccaccgccgttaatcctccaaccaa |
29665213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 118 - 206
Target Start/End: Original strand, 43345889 - 43345978
Alignment:
| Q |
118 |
caaatgggtttgaaggaattggattcaaacccc-taaattcaatgatctagaagctcgtatctagaacccagaaattcaatgatttaaaa |
206 |
Q |
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| T |
43345889 |
caaatggatttgaaggaattggattcaaaacccataaattcaatgatctagaagcttagatctagaacccaaaacttcaatgattcaaaa |
43345978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 126 - 206
Target Start/End: Complemental strand, 15857170 - 15857089
Alignment:
| Q |
126 |
tttgaaggaattggattcaaacccct-aaattcaatgatctagaagctcgtatctagaacccagaaattcaatgatttaaaa |
206 |
Q |
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| T |
15857170 |
tttgaagaaattggattcaaaacccagaaattcaatgatctagaagctcagatctagaacccaaaatttcaatgatttaaaa |
15857089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 126 - 206
Target Start/End: Original strand, 34616726 - 34616807
Alignment:
| Q |
126 |
tttgaaggaattggattcaaacccc-taaattcaatgatctagaagctcgtatctagaacccagaaattcaatgatttaaaa |
206 |
Q |
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||||||||||||||||||||| ||| ||||| |||||||| | |||||| |||||||||||| ||||||||||||| |||| |
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| T |
34616726 |
tttgaaggaattggattcaaaacccataaatgcaatgatccataagctcagatctagaacccaaaaattcaatgattcaaaa |
34616807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 146
Target Start/End: Original strand, 24068904 - 24068941
Alignment:
| Q |
109 |
aaattgaatcaaatgggtttgaaggaattggattcaaa |
146 |
Q |
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| T |
24068904 |
aaattgaatcaaatgggtttgaaggaattggattcaaa |
24068941 |
T |
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