View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1583_high_1 (Length: 634)
Name: NF1583_high_1
Description: NF1583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1583_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 467; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 19 - 623
Target Start/End: Original strand, 2372224 - 2372820
Alignment:
| Q |
19 |
atttattcctctctctttctgggtaatttttcttcattctaaaattgtttctctttaattgaaaattattgcaattgttatgtttaatttgatgtttgcg |
118 |
Q |
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| T |
2372224 |
atttaatcccctctctttctgggtaatttttcttcattctaaaatagtttctctttaattgaaaattattgcaattgttatgtttaatttgatgtttgcg |
2372323 |
T |
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| Q |
119 |
taatagtggtgacttaagaccttagcgttgacttggtctcttgtgcctcacaagtgaacgatagggttgaacccctatgattagttagcccgtggactgg |
218 |
Q |
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||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
2372324 |
taatagtggggacttaagaccttagtgttgacttggtctcttgtgcctcacaagtggacgatagggttgaacccctatgattagttagcctgtggactgg |
2372423 |
T |
|
| Q |
219 |
atgccgagtttctttcnnnnnnnnnnnnnnnnaatgatgtttgatactgatagcatgttctctcgcatttcaggatttctatcaaatcttttcaat---- |
314 |
Q |
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||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2372424 |
atgccgagttttttt--------tttttttttaatgatgtttgatactgatagcatgttctctcgcatttcaggatttctatcaaatcttttcaatcaat |
2372515 |
T |
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| Q |
315 |
gctctgagacttccttcaaccagcagctttgtgactgactggttacacaattttgttttgtgatagcatcttcgttgttctggtatgttctggatccatt |
414 |
Q |
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|||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2372516 |
gctccgagacttccttcaaacagcagctttgtgac----tggttacacaattttgttttgtgatagcatcttcgttgttctggtatgttctggatccatt |
2372611 |
T |
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| Q |
415 |
cctttgtttctggtttgttttaattatggcttgtgattttacattttgtgctaaattcacgatttctggtctccaatctatttttgttatgtttcatgtt |
514 |
Q |
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| T |
2372612 |
cctttgtttctggtttgttttaattatggcttgtgattttacattttgtgctaaattctccatttctggtctccaatctatttttgttatgtttcatgtt |
2372711 |
T |
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| Q |
515 |
gattccatttaattcattcgtcctcatgttttcaatttcttgtttctggatttgattttagtctcattgtgattcaaaattttcattaagaaagcacttt |
614 |
Q |
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| T |
2372712 |
gattccatttaattcattcgtcctcatgttttcaatttcttgtttctggatttgattttagtctcattgtaattcaaaattttcattaagaaagcacttt |
2372811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 420 - 621
Target Start/End: Original strand, 2367216 - 2367414
Alignment:
| Q |
420 |
gtttctggtttgttttaattatggcttgtgattttacattttgtgctaaattcacgatttctggtctccaatctatttttgttatgtttcatgttgattc |
519 |
Q |
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| T |
2367216 |
gtttctggtttgtttatattatg---tgtgattttaccttttgtactaaattcgtgatttcaggtctccagtctgttcttgttatgtttcatgttgattc |
2367312 |
T |
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| Q |
520 |
catttaattcattcgtcctcatgttttcaatttcttgtttctggatttgattttagtctcattgtgattcaaaattttcattaagaaagcacttttcaat |
619 |
Q |
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| T |
2367313 |
catttaattagttagtcctcgtgttttctatttcttgtttttgaatttgattttagtttccttgtgattcaaaattttcattaggaaaggacttttcaat |
2367412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 502 - 619
Target Start/End: Complemental strand, 12114137 - 12114019
Alignment:
| Q |
502 |
tatgtttcatgttgattccatttaattcattcgtcctcatgttttcaatttcttgtttctggatttgattttagtctcattgtgattcaaaat-tttcat |
600 |
Q |
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|||||||||||||||||||||||| ||| || |||||| ||||| ||||||||||||| ||||||||||| || || | ||||||||||| ||| || |
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| T |
12114137 |
tatgtttcatgttgattccatttagttctttggtcctcgtgtttctaatttcttgtttccagatttgatttttgtttcctattgattcaaaatgttttat |
12114038 |
T |
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| Q |
601 |
taagaaagcacttttcaat |
619 |
Q |
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| T |
12114037 |
ccagaaggcacttttcaat |
12114019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 87 - 139
Target Start/End: Original strand, 2366746 - 2366798
Alignment:
| Q |
87 |
ttgcaattgttatgtttaatttgatgtttgcgtaatagtggtgacttaagacc |
139 |
Q |
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| T |
2366746 |
ttgcaattgttgtgtttaatttgatgtttgagtaatagtgttgacttaggacc |
2366798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 271 - 387
Target Start/End: Complemental strand, 12114396 - 12114284
Alignment:
| Q |
271 |
gcatgttctctcgcatttcaggatttctatcaaatcttttcaatgctctgagacttccttcaaccagcagctttgtgactgactggttacacaattttgt |
370 |
Q |
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|||| ||||||| |||||||||| || | |||||||| ||| ||| || | ||||| |||||| | | | ||||||||||| |||||||||||||| |
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| T |
12114396 |
gcatcttctctcccatttcaggagttttgtcaaatctcttcgatgatcggtgactttcttcaaactaccgatttgtgactga----ttacacaattttgt |
12114301 |
T |
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| Q |
371 |
tttgtgatagcatcttc |
387 |
Q |
| |
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|||||||| |||||||| |
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| T |
12114300 |
tttgtgatcgcatcttc |
12114284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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