View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1583_high_12 (Length: 411)
Name: NF1583_high_12
Description: NF1583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1583_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 17 - 402
Target Start/End: Complemental strand, 45272293 - 45271908
Alignment:
| Q |
17 |
agattttgatctcaattagtctctattatttgattattcaggttgttgaaatcgaaacagctcctaagaaaaaaggacatcataagagaaggaaattggt |
116 |
Q |
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| T |
45272293 |
agattttgatctcaattagtctctattatttgattattcaggttgttgaaatcgaaacagctcctaagaaaaaaggacatcataagagaaggaaattggt |
45272194 |
T |
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| Q |
117 |
ggcgatgaagaagaatctactcaacgttaagaatctgcagaagaatagcatgaacaaaatgatggcctgcgctggcaatgatagaagaaaacttcttgcg |
216 |
Q |
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| T |
45272193 |
ggcgatgaagaagaatctactcaacgttaagaatctgcagaagaatagcatgaacaaaatgatggcctgcgctggcaatgatagaagaaaacttcttgcg |
45272094 |
T |
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| Q |
217 |
gatcattgattaatacattagttcctgctagaacgaatgttgaagacacattaattatataataacttagaaataagtgtttctttgtttgggaatttct |
316 |
Q |
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| T |
45272093 |
gatcattgattaatacattagttgctgctagaacgaatgttgaagacacattaattatataataacttagaaataagtgtttctttgtttgggaatttct |
45271994 |
T |
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| Q |
317 |
aggcatttttgggttcaatttcttctgaatccacatatactggtagctaaatgtatgtaatactatttgatcatatttagaataat |
402 |
Q |
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| T |
45271993 |
aggcattttttggttcaatttcttctgaatccacatatactggtagctaaatgtatgtaatactatttgatcatatttagaataat |
45271908 |
T |
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