View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1583_high_14 (Length: 385)
Name: NF1583_high_14
Description: NF1583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1583_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 23915847 - 23915592
Alignment:
| Q |
1 |
tcatcaattgttgagacatcaaatgagaaagcaacctcagttgatcaaaaatgaaatcaagaaaattcaaccctctaacattcaatacaacaacccaata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23915847 |
tcatcaattgttgagacatcaaatgagaaagcaacctcagttgatcaaaaatgaaatcaagaaaattcaaccctctaacattcaatacaacaacccaata |
23915748 |
T |
|
| Q |
101 |
ggagaagaaaacatagaaacagaaacaaactcaattgatcagttgtttgttttcagaagaaaaattacctgaggataataattgatagcaattgatcagt |
200 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23915747 |
ggagaaggaaacatagaaacagaaacaaactcaattgatcagttgtttgttttcagaagaaaaattacctgaggataataattgatagcaattgatcagt |
23915648 |
T |
|
| Q |
201 |
tggggtaattgatagcaataggagaagaagaagaacagaaacaaacaacccacatg |
256 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
23915647 |
tggggtaattgatagcaatcggagaagaagaagaacagaaacaaacaacccacatg |
23915592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 324 - 368
Target Start/End: Complemental strand, 23915524 - 23915480
Alignment:
| Q |
324 |
catatatatgggaaagacttccaattaccaattgacgaaaatacc |
368 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23915524 |
catatatatgggaaagacttccaattaccaattgacgaaaatacc |
23915480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 5 - 256
Target Start/End: Original strand, 18989679 - 18989930
Alignment:
| Q |
5 |
caattgttgagacatcaaatgagaaagcaacctcagttgatcaaaaatgaaatcaagaaaattcaaccctctaacattcaatacaacaacccaataggag |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18989679 |
caattgttgagacatcaaatgagaaagcaacctcagttgatcaaaaatgaaatcaagaaaattcaaccctctaacattcaatacaacaacccaataggag |
18989778 |
T |
|
| Q |
105 |
aagaaaacatagaaacagaaacaaactcaattgatcagttgtttgttttcagaagaaaaattacctgaggataataattgatagcaattgatcagttggg |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18989779 |
aagaaaacatagaaacagaaacaaactcaattgatcagttgtttgttttcagaagaaaaattacctgaggataataattgatagcaattgatcagttggg |
18989878 |
T |
|
| Q |
205 |
gtaattgatagcaataggagaagaagaagaacagaaacaaacaacccacatg |
256 |
Q |
| |
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||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
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|
| T |
18989879 |
gtaattgatagcaatcggagaagaagaagaacagacacaaacaacccacatg |
18989930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 324 - 368
Target Start/End: Original strand, 18989998 - 18990042
Alignment:
| Q |
324 |
catatatatgggaaagacttccaattaccaattgacgaaaatacc |
368 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18989998 |
catatatatgggaaagacttccaattaccaattgacgaaaatacc |
18990042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 31 - 256
Target Start/End: Complemental strand, 30338768 - 30338543
Alignment:
| Q |
31 |
gcaacctcagttgatcaaaaatgaaatcaagaaaattcaaccctctaacattcaatacaacaacccaataggagaagaaaacatagaaacagaaacaaac |
130 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||| |
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| T |
30338768 |
gcaacctcagttgatcaaaaatgaaatcaagaaaattcaaccctctaaaattcaatacaacaacccaataggagaagaaaacaaagaaacagagacaaac |
30338669 |
T |
|
| Q |
131 |
tcaattgatcagttgtttgttttcagaagaaaaattacctgaggataataattgatagcaattgatcagttggggtaattgatagcaataggagaagaag |
230 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
30338668 |
tcaattgatcagttgtttgttttcagaagaaaaattacctgaggataataattgatagcaattgatcagctggggtaattgatagcaatcagagaagaag |
30338569 |
T |
|
| Q |
231 |
aagaacagaaacaaacaacccacatg |
256 |
Q |
| |
|
||||||| |||||||||||||||||| |
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| T |
30338568 |
aagaacataaacaaacaacccacatg |
30338543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 31 - 128
Target Start/End: Original strand, 26164577 - 26164676
Alignment:
| Q |
31 |
gcaacctcagttgatcaaaaatgaaatcaagaaaa-ttcaaccctctaacattcaatacaacaacccaataggagaagaa-aacatagaaacagaaacaa |
128 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||| |||| |||||||||||||| |
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| T |
26164577 |
gcaaccacaattgatcaaaaatgaaatcaagaaaaattcaaccctctaaccttcaatacaacaacccaatgggagaagaagaacaaagaaacagaaacaa |
26164676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 325 - 368
Target Start/End: Complemental strand, 30338513 - 30338470
Alignment:
| Q |
325 |
atatatatgggaaagacttccaattaccaattgacgaaaatacc |
368 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
30338513 |
atatataagggaaagacttccaattaccaattgacgaaaatacc |
30338470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 26164056 - 26164091
Alignment:
| Q |
1 |
tcatcaattgttgagacatcaaatgagaaagcaacc |
36 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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| T |
26164056 |
tcatcaattgttgagacatcaaatgagaaagcaacc |
26164091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 30339198 - 30339163
Alignment:
| Q |
1 |
tcatcaattgttgagacatcaaatgagaaagcaacc |
36 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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|
| T |
30339198 |
tcatcaattgttgagacatcaaatgagaaagcaacc |
30339163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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