View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1583_high_21 (Length: 346)

Name: NF1583_high_21
Description: NF1583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1583_high_21
NF1583_high_21
[»] chr1 (1 HSPs)
chr1 (1-337)||(36315126-36315465)
[»] chr8 (22 HSPs)
chr8 (112-337)||(19344454-19344679)
chr8 (111-337)||(19389897-19390123)
chr8 (112-278)||(19504652-19504818)
chr8 (112-321)||(19336766-19336975)
chr8 (114-336)||(19489443-19489664)
chr8 (106-293)||(19470107-19470294)
chr8 (106-293)||(19541031-19541218)
chr8 (106-293)||(19591480-19591667)
chr8 (111-296)||(19458413-19458598)
chr8 (111-296)||(19556091-19556276)
chr8 (106-309)||(19410120-19410323)
chr8 (106-309)||(19457139-19457342)
chr8 (106-309)||(19523736-19523939)
chr8 (112-309)||(19354801-19354995)
chr8 (119-309)||(19375930-19376120)
chr8 (112-287)||(19173419-19173597)
chr8 (218-337)||(19373462-19373581)
chr8 (114-309)||(19404064-19404256)
chr8 (114-309)||(19447846-19448041)
chr8 (114-309)||(19533035-19533230)
chr8 (111-155)||(19468341-19468385)
chr8 (106-155)||(19469168-19469217)


Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 36315126 - 36315465
Alignment:
Q  1 tctagtgataaaactgttgaatcttcttctaagtcaaaggggtgatttctatcataaaaccacactactgtgccattaacatctattacaatcaagtatc 100  Q
    |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36315126 tctagtgataaaactgttgaatcttcttctgagtcaaagggatgatttctatcataaaaccacactactgtgccattaacatctattacaatcaagtatc 36315225  T
Q  101 ttctcaattcaagacaatacttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgttgcattaacata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36315226 ttctcaattcaagacaatacttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgttgcattaacata 36315325  T
Q  201 aagactagtagtggtactccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatg---aatattgtttcaaa 297  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||    
T  36315326 aagactagtagtagtactccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatgaataatattgtttcaaa 36315425  T
Q  298 acgaagagaaatgtactcaccaaacccgaaggagaataat 337  Q
    | ||||||||||||||||| ||||||||||||||||||||    
T  36315426 aagaagagaaatgtactcatcaaacccgaaggagaataat 36315465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 138; Significance: 4e-72; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 112 - 337
Target Start/End: Complemental strand, 19344679 - 19344454
Alignment:
Q  112 agacaatacttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgttgcattaacataaagactagtag 211  Q
    |||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||| ||||||||||||||| |||   ||||||    
T  19344679 agacaatacttgccttgtttagaacatagcttggatttggaattcaatgtatcacctggcttcaaactatcatttgttgcattaacacaaatgttagtag 19344580  T
Q  212 tggtactccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatgaatattgtttcaaaacgaagagaaatgt 311  Q
      ||| ||||||||||||||||||||||||| | || ||||||||||||  ||||||||||||||||| |||||||||||||||||| |||||||||| |    
T  19344579 aagtaatccaccacaaccataagtatatcaatacaacttgtttctttatcttaaagcttatcatgatcgatgaatattgtttcaaaaagaagagaaatat 19344480  T
Q  312 actcaccaaacccgaaggagaataat 337  Q
    ||| | | ||||||||||||||||||    
T  19344479 acttatcgaacccgaaggagaataat 19344454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 111 - 337
Target Start/End: Complemental strand, 19390123 - 19389897
Alignment:
Q  111 aagacaatacttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgttgcattaacataaagactagta 210  Q
    ||||||||||||| |||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||   |||||    
T  19390123 aagacaatacttgtcttgtttagaacgtagcttggaattggaattcaatgtatcacctggcttcaaactatcatttgttgcattaacacaaatgttagta 19390024  T
Q  211 gtggtactccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatgaatattgtttcaaaacgaagagaaatg 310  Q
    |  ||| ||||||||||||||||||||||||| | || |||||||||||||  | |||||||||||||  ||||  |||||||||||| ||||||||||     
T  19390023 gaagtaatccaccacaaccataagtatatcaatacaacttgtttctttatttcatagcttatcatgattgatgataattgtttcaaaaagaagagaaata 19389924  T
Q  311 tactcaccaaacccgaaggagaataat 337  Q
    ||||||| ||||||||| |||||||||    
T  19389923 tactcactaaacccgaacgagaataat 19389897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 112 - 278
Target Start/End: Original strand, 19504652 - 19504818
Alignment:
Q  112 agacaatacttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgttgcattaacataaagactagtag 211  Q
    |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||| || ||| ||||||||    
T  19504652 agacaatacttgtcttgtttagaacatagcgtggaattggaattcaatgtatcacctggcttcaaactatctttcgttgcattaccacaaatactagtag 19504751  T
Q  212 tggtactccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgat 278  Q
    | ||||||||||||||||||||||||||||| | || |||||||||||||   || |||||||||||    
T  19504752 tagtactccaccacaaccataagtatatcaatacaacttgtttctttatttcgaaacttatcatgat 19504818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 112 - 321
Target Start/End: Complemental strand, 19336975 - 19336766
Alignment:
Q  112 agacaatacttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgttgcattaacataaagactagtag 211  Q
    |||||| |||| ||||||| |||||||||| |||| |||||||| ||||||||||||||||||||||||||  ||||||| |||||| ||| | ||| ||    
T  19336975 agacaaaactttccttgttcagaacatagcttggatttggaatttaatgtatcacctggcttcaaactatcacttgttgctttaacacaaatattagcag 19336876  T
Q  212 tggtactccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatgaatattgtttcaaaacgaagagaaatgt 311  Q
    | ||  ||||||||||||||||||||||| ||| ||||||||| ||| || ||||||||||||||||  |||||||||||||||||| |||||||||| |    
T  19336875 tagtgttccaccacaaccataagtatatccaaacaatttgtttatttcttttaaagcttatcatgattgatgaatattgtttcaaaaagaagagaaatat 19336776  T
Q  312 actcaccaaa 321  Q
    ||| ||||||    
T  19336775 acttaccaaa 19336766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 114 - 336
Target Start/End: Complemental strand, 19489664 - 19489443
Alignment:
Q  114 acaatacttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgttgcattaacataaagactagtagtg 213  Q
    |||||||||||||||||| ||||||||| |||| ||| || | | ||||||||||||||||||||||||  |||||||||||||| ||| ||| |||||     
T  19489664 acaatacttgccttgtttggaacatagcttggatttgtaagtcactgtatcacctggcttcaaactatcacttgttgcattaacacaaatactcgtagta 19489565  T
Q  214 gtactccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatgaatattgtttcaaaacgaagagaaatgtac 313  Q
    ||| || |||||||||| ||| ||||||||| | | |||||||||||| ||||||||||||||||   ||| ||||||||||||| |||||||||| |||    
T  19489564 gtattc-accacaaccaaaagcatatcaaaacagtctgtttctttattttaaagcttatcatgattgctgagtattgtttcaaaatgaagagaaatatac 19489466  T
Q  314 tcaccaaacccgaaggagaataa 336  Q
    ||||||||||| |||||| ||||    
T  19489465 tcaccaaaccccaaggagtataa 19489443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 106 - 293
Target Start/End: Original strand, 19470107 - 19470294
Alignment:
Q  106 aattcaagacaatacttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgttgcattaacataaagac 205  Q
    |||| ||||||| ||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||| ||||||||||||||| |||       
T  19470107 aattgaagacaaaacttgccttgtttagaacatagcttggatttggaattcaatgtatcacctggcttcaaactatcatttgttgcattaacacaaatgt 19470206  T
Q  206 tagtagtggtactccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatgaatattgttt 293  Q
    ||||||  ||| ||||||||||||||||||||||||| | || ||||||||| |||  ||||||||||||| |  |||||||||||||    
T  19470207 tagtagaagtaatccaccacaaccataagtatatcaatacaacttgtttcttgatttcaaagcttatcatgtttgatgaatattgttt 19470294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 106 - 293
Target Start/End: Original strand, 19541031 - 19541218
Alignment:
Q  106 aattcaagacaatacttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgttgcattaacataaagac 205  Q
    |||| ||||||| ||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||| ||||||||||||||| |||       
T  19541031 aattgaagacaaaacttgccttgtttagaacatagcttggatttggaattcaatgtatcacctggcttcaaactatcatttgttgcattaacacaaatgt 19541130  T
Q  206 tagtagtggtactccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatgaatattgttt 293  Q
    ||||||  ||| ||||||||||||||||||||||||| | || ||||||||| |||  ||||||||||||| |  |||||||||||||    
T  19541131 tagtagaagtaatccaccacaaccataagtatatcaatacaacttgtttcttgatttcaaagcttatcatgtttgatgaatattgttt 19541218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 106 - 293
Target Start/End: Complemental strand, 19591667 - 19591480
Alignment:
Q  106 aattcaagacaatacttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgttgcattaacataaagac 205  Q
    |||| ||||||| ||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||| ||||||||||||||| |||       
T  19591667 aattgaagacaaaacttgccttgtttagaacatagcttggatttggaattcaatgtatcacctggcttcaaactatcatttgttgcattaacacaaatgt 19591568  T
Q  206 tagtagtggtactccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatgaatattgttt 293  Q
    ||||||  ||| ||||||||||||||||||||||||| | || ||||||||| |||  ||||||||||||| |  |||||||||||||    
T  19591567 tagtagaagtaatccaccacaaccataagtatatcaatacaacttgtttcttgatttcaaagcttatcatgtttgatgaatattgttt 19591480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 111 - 296
Target Start/End: Original strand, 19458413 - 19458598
Alignment:
Q  111 aagacaatacttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgttgcattaacataaagactagta 210  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||   | |||| | |||| ||| | ||| |    
T  19458413 aagacaaaacttgccttgtttagaacatagcgtggaattggaattcaatgtatcacctggcttcaaactatcacgttttgcttcaacacaaatattagca 19458512  T
Q  211 gtggtactccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatgaatattgtttcaa 296  Q
    || ||| ||||||||||||||||||||||||| | || |||||||||||||   ||||||||||||||  ||||||||||||||||    
T  19458513 gtagtaatccaccacaaccataagtatatcaatacaacttgtttctttatttccaagcttatcatgattgatgaatattgtttcaa 19458598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 111 - 296
Target Start/End: Original strand, 19556091 - 19556276
Alignment:
Q  111 aagacaatacttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgttgcattaacataaagactagta 210  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||   | |||| | |||| ||| | ||| |    
T  19556091 aagacaaaacttgccttgtttagaacatagcgtggaattggaattcaatgtatcacctggcttcaaactatcacgttttgcttcaacacaaatattagca 19556190  T
Q  211 gtggtactccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatgaatattgtttcaa 296  Q
    || ||| ||||||||||||||||||||||||| | || |||||||||||||   ||||||||||||||  ||||||||||||||||    
T  19556191 gtagtaatccaccacaaccataagtatatcaatacaacttgtttctttatttccaagcttatcatgattgatgaatattgtttcaa 19556276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 106 - 309
Target Start/End: Complemental strand, 19410323 - 19410120
Alignment:
Q  106 aattcaagacaatacttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgttgcattaacataaagac 205  Q
    |||| ||||||| ||||||||||||||||||||||| |||| ||| |||| ||| ||||||||||||||||||||||  ||||||| | |||| ||| |     
T  19410323 aattgaagacaaaacttgccttgtttagaacatagcttggatttgtaattcaatttatcacctggcttcaaactatcacttgttgcttcaacacaaatat 19410224  T
Q  206 tagtagtggtactccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatgaatattgtttcaaaacgaagag 305  Q
    ||| ||| ||  ||||||||||||||| ||||||||| | || |||||||||||||  |||||||||||| ||   ||||||||||||||||| ||||||    
T  19410223 tagcagtagtgttccaccacaaccataggtatatcaatacaacttgtttctttatttcaaagcttatcatcattgttgaatattgtttcaaaaagaagag 19410124  T
Q  306 aaat 309  Q
    ||||    
T  19410123 aaat 19410120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 106 - 309
Target Start/End: Complemental strand, 19457342 - 19457139
Alignment:
Q  106 aattcaagacaatacttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgttgcattaacataaagac 205  Q
    |||| ||||||| ||||||||||||||||||||||| |||| ||| |||| ||| ||||||||||||||||||||||  ||||||| | |||| ||| |     
T  19457342 aattgaagacaaaacttgccttgtttagaacatagcttggatttgtaattcaatttatcacctggcttcaaactatcacttgttgcttcaacacaaatat 19457243  T
Q  206 tagtagtggtactccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatgaatattgtttcaaaacgaagag 305  Q
    ||| ||| ||  ||||||||||||||| ||||||||| | || |||||||||||||  |||||||||||| ||   ||||||||||||||||| ||||||    
T  19457242 tagcagtagtgttccaccacaaccataggtatatcaatacaacttgtttctttatttcaaagcttatcatcattgttgaatattgtttcaaaaagaagag 19457143  T
Q  306 aaat 309  Q
    ||||    
T  19457142 aaat 19457139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 106 - 309
Target Start/End: Original strand, 19523736 - 19523939
Alignment:
Q  106 aattcaagacaatacttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgttgcattaacataaagac 205  Q
    |||| ||||||| ||||||||||||||||||||||| |||| ||| |||| ||| ||||||||||||||||||||||  ||||||| | |||| ||| |     
T  19523736 aattgaagacaaaacttgccttgtttagaacatagcttggatttgtaattcaatttatcacctggcttcaaactatcacttgttgcttcaacacaaatat 19523835  T
Q  206 tagtagtggtactccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatgaatattgtttcaaaacgaagag 305  Q
    ||| ||| ||  ||||||||||||||| ||||||||| | || |||||||||||||  |||||||||||| ||   ||||||||||||||||| ||||||    
T  19523836 tagcagtagtgttccaccacaaccataggtatatcaatacaacttgtttctttatttcaaagcttatcatcattgttgaatattgtttcaaaaagaagag 19523935  T
Q  306 aaat 309  Q
    ||||    
T  19523936 aaat 19523939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 112 - 309
Target Start/End: Complemental strand, 19354995 - 19354801
Alignment:
Q  112 agacaatacttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgttgcattaacataaagactagtag 211  Q
    ||||||||| |||||||||||||||||||  ||||||| | ||  ||| ||||||||||| |||||||||| |||||||| |||||| |||  |||||||    
T  19354995 agacaatacatgccttgtttagaacataggttggaatttgcatccaatttatcacctggcctcaaactatcatttgttgctttaacacaaatgctagtag 19354896  T
Q  212 tggtactccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatgaatattgtttcaaaacgaagagaaat 309  Q
    || |   |||||||||||||| ||||||||| | || |||||||||||||  |||||||||||||||  ||||||||||||| |||| ||||||||||    
T  19354895 tgtt---ccaccacaaccataggtatatcaatacaacttgtttctttatttcaaagcttatcatgattgatgaatattgtttaaaaaagaagagaaat 19354801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 119 - 309
Target Start/End: Complemental strand, 19376120 - 19375930
Alignment:
Q  119 acttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgttgcattaacataaagactagtagtggtact 218  Q
    ||||||||||||| ||| ||||||||||||| | || |||| ||||||||||||||||||||||  ||||||| | |||| ||| | ||| ||| ||  |    
T  19376120 acttgccttgttttgaatatagcgtggaatttgcatcaaatttatcacctggcttcaaactatcacttgttgcttcaacacaaatattagcagtagtgtt 19376021  T
Q  219 ccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatgaatattgtttcaaaacgaagagaaat 309  Q
    |||||||||||||| ||||||||| | || |||||||||||||  |||||||||||| ||  |||||||||||||||||| ||||||||||    
T  19376020 ccaccacaaccataggtatatcaatacaacttgtttctttatttcaaagcttatcatcattgatgaatattgtttcaaaaagaagagaaat 19375930  T

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Target: chr8; HSP #16
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 112 - 287
Target Start/End: Original strand, 19173419 - 19173597
Alignment:
Q  112 agacaatacttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgttgcattaacataaagactagt-- 209  Q
    |||||| ||||||||||||||||||||| | |||| || ||||| ||||||||||||||||||||||||||  ||||||| |||||| ||| | ||||      
T  19173419 agacaaaacttgccttgtttagaacataacttggatttcgaattcaatgtatcacctggcttcaaactatcacttgttgctttaacacaaatattagtag 19173518  T
Q  210 -agtggtactccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatgaata 287  Q
     ||| ||| ||||||||||||||||||||||||| | || |||||||||||||  |||||||||||||||  |||||||    
T  19173519 cagttgtattccaccacaaccataagtatatcaatacaacttgtttctttatttcaaagcttatcatgattgatgaata 19173597  T

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Target: chr8; HSP #17
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 218 - 337
Target Start/End: Complemental strand, 19373581 - 19373462
Alignment:
Q  218 tccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatgaatattgtttcaaaacgaagagaaatgtactcac 317  Q
    ||||||||||||||||||||||||| | || ||||||||||||  ||||||||||||||||| |||||||||||||||||| |||||||||| |||| |     
T  19373581 tccaccacaaccataagtatatcaatacaacttgtttctttatcttaaagcttatcatgatcgatgaatattgtttcaaaaagaagagaaatatactgat 19373482  T
Q  318 caaacccgaaggagaataat 337  Q
    | ||||||||||||||||||    
T  19373481 cgaacccgaaggagaataat 19373462  T

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Target: chr8; HSP #18
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 114 - 309
Target Start/End: Complemental strand, 19404256 - 19404064
Alignment:
Q  114 acaatacttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgttgcattaacataaagactagtagtg 213  Q
    ||||||||| |||||||||||||||||  ||||||| | ||  ||| |||||||||||||||||||||| ||| |||| |||||| |||  ||||| |||    
T  19404256 acaatacttaccttgtttagaacataggttggaatttgcatccaatttatcacctggcttcaaactatcatttattgctttaacacaaatgctagtcgtg 19404157  T
Q  214 gtactccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatgaatattgtttcaaaacgaagagaaat 309  Q
     |   |||||||||||||| ||||||||| | || |||||||||||||  ||| |||||||| ||  |||||||||||||||||| ||||||||||    
T  19404156 tt---ccaccacaaccataggtatatcaatacaacttgtttctttatttcaaaacttatcatcattgatgaatattgtttcaaaaagaagagaaat 19404064  T

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Target: chr8; HSP #19
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 114 - 309
Target Start/End: Complemental strand, 19448041 - 19447846
Alignment:
Q  114 acaatacttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgttgcattaacataaagactagtagtg 213  Q
    |||| ||||||||||||| ||| ||||||||||||| | || |||| ||||||||||||||||||||||  ||||||| | |||| ||| | ||| |       
T  19448041 acaaaacttgccttgttttgaatatagcgtggaatttgcatcaaatttatcacctggcttcaaactatcacttgttgcttcaacacaaatattagcaaca 19447942  T
Q  214 gtactccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatgaatattgtttcaaaacgaagagaaat 309  Q
    ||  ||||||||||||||| ||||||||| | |  |||||||||||||  |||||||||||||||  ||||||||| |||||||| ||||||||||    
T  19447941 gtgttccaccacaaccataggtatatcaatagatcttgtttctttatttcaaagcttatcatgattcatgaatattttttcaaaaagaagagaaat 19447846  T

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Target: chr8; HSP #20
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 114 - 309
Target Start/End: Original strand, 19533035 - 19533230
Alignment:
Q  114 acaatacttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgttgcattaacataaagactagtagtg 213  Q
    |||| ||||||||||||| ||| ||||||||||||| | || |||| ||||||||||||||||||||||  ||||||| | |||| ||| | ||| |       
T  19533035 acaaaacttgccttgttttgaatatagcgtggaatttgcatcaaatttatcacctggcttcaaactatcacttgttgcttcaacacaaatattagcaaca 19533134  T
Q  214 gtactccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatgaatattgtttcaaaacgaagagaaat 309  Q
    ||  ||||||||||||||| ||||||||| | |  |||||||||||||  |||||||||||||||  ||||||||| |||||||| ||||||||||    
T  19533135 gtgttccaccacaaccataggtatatcaatagatcttgtttctttatttcaaagcttatcatgattcatgaatattttttcaaaaagaagagaaat 19533230  T

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Target: chr8; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 111 - 155
Target Start/End: Original strand, 19468341 - 19468385
Alignment:
Q  111 aagacaatacttgccttgtttagaacatagcgtggaattggaatt 155  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  19468341 aagacaaaacttgccttgtttagaacatagcgtggaattggaatt 19468385  T

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Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 106 - 155
Target Start/End: Original strand, 19469168 - 19469217
Alignment:
Q  106 aattcaagacaatacttgccttgtttagaacatagcgtggaattggaatt 155  Q
    |||| ||||||| ||||||||||||||||||||||| |||| ||||||||    
T  19469168 aattgaagacaaaacttgccttgtttagaacatagcttggatttggaatt 19469217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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