View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1583_high_24 (Length: 326)
Name: NF1583_high_24
Description: NF1583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1583_high_24 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 95 - 291
Target Start/End: Complemental strand, 2843979 - 2843783
Alignment:
| Q |
95 |
ttaaaaacaaattaatgaaatttgttgtaggttgaaggtattatatccttgatatcttgaactagacgtggtagaaattttagacgtggaactatcttga |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2843979 |
ttaaaaacaaattaatgaaatttgttgtaggttgaaggtattatatccttgatatcttgaactagacgtggtagaaattttagacgtggaactatcttga |
2843880 |
T |
|
| Q |
195 |
tgtttaatttgaaagtgaggtattttttattttgtaaacaaaaaagaaagtttagaaataattctatcatatcctatcctaatccattcctatccta |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
2843879 |
tgtttaatttgaaagtgaggtattttttattttgtaaacaaaaaagaaagtttagaaataattctatcctatcctatcctaatccattcctatccta |
2843783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 2844072 - 2844032
Alignment:
| Q |
5 |
aattattagcgcatttgatctttcacggagaaaagtaaata |
45 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
2844072 |
aattattagcccatttgatctttcacgcagaaaagtaaata |
2844032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 15741 times since January 2019
Visitors: 1170