View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1583_high_28 (Length: 314)
Name: NF1583_high_28
Description: NF1583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1583_high_28 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 19796532 - 19796228
Alignment:
| Q |
1 |
acctccgtggtgttcgtggtaccggcaagtccaataaagaaggcttctacgctgctgctctctggttgcatgaaaatcaccctaaaaccctagctaccaa |
100 |
Q |
| |
|
|||||||||| || || |||||||| |||||||| ||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
19796532 |
acctccgtggcgtccgcggtaccggaaagtccaacaaagaaggcttctacgccgccgctctctggtttcatgaaaatcaccctaaaaccctagctaccaa |
19796433 |
T |
|
| Q |
101 |
tgttccttctctcgctgactttggctacttcaaagatctccctgagatcctctaccgtcttctcgaaggttctgaagttcgcaaaacacagaaagaagag |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19796432 |
tgttccttctctcgctgactttggctacttcaaagatctccctgagatcctctaccgtcttctcgaaggttctgaagttcgcaaaacacagaaagaagag |
19796333 |
T |
|
| Q |
201 |
tggaaggaaaggaaatctggatccaaaaggaaatcttcatcaggatcaaccccttttttaag---------gaagaaaaaacaacgacaccaccacaaca |
291 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
19796332 |
tggagggaaaggaaatctggatccaaaaggaaatcttcatcaggatcaaccccttttttaaggagaggaatgaagaaaaaacaacgacaccaccacaaca |
19796233 |
T |
|
| Q |
292 |
acaag |
296 |
Q |
| |
|
||||| |
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|
| T |
19796232 |
acaag |
19796228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 88 - 226
Target Start/End: Original strand, 19785157 - 19785295
Alignment:
| Q |
88 |
ccctagctaccaatgttccttctctcgctgactttggctacttcaaagatctccctgagatcctctaccgtcttctcgaaggttctgaagttcgcaaaac |
187 |
Q |
| |
|
||||| |||||||||||||| | || ||||||||||| |||||||||||||||||||| || || |||||| ||||| ||||||||| | |||| ||| |
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| T |
19785157 |
ccctaactaccaatgttcctacacttgctgactttggttacttcaaagatctccctgaaattctataccgtattctccaaggttctggaattcgtgaaat |
19785256 |
T |
|
| Q |
188 |
acagaaagaagagtggaaggaaaggaaatctggatccaa |
226 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| |
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|
| T |
19785257 |
ccagaaagaagagtggaatgaaaggaaatctggatccaa |
19785295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 15835770 - 15835568
Alignment:
| Q |
1 |
acctccgtggtgttcgtggtaccggcaagtccaataaagaaggcttctacgctgctgctctctggttgcatgaaaatcaccctaaaaccctagctaccaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15835770 |
acctccgtggtgttcgtggtaccggcaagtccaataaagaaggcttctacgctgctgctctctggttgcatgaaaatcaccctaaaaccctagctaccaa |
15835671 |
T |
|
| Q |
101 |
tgttccttctctcgctgactttggctacttcaaagatctccctgagatcctctaccgtcttctcgaaggttctgaagttcgcaaaacacagaaagaagag |
200 |
Q |
| |
|
|||| |||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||| |
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|
| T |
15835670 |
tgtttcttcattcgctgcctttggttacttcaaagatctccctgagatcctctaccgtcttctcgaaggttttgaagttcgcgaaaagcagaaagaagag |
15835571 |
T |
|
| Q |
201 |
tgg |
203 |
Q |
| |
|
||| |
|
|
| T |
15835570 |
tgg |
15835568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 47713584 - 47713422
Alignment:
| Q |
1 |
acctccgtggtgttcgtggtaccggcaagtccaataaagaaggcttctacgctgctgctctctggttgcatgaaaatcaccctaaaaccctagctaccaa |
100 |
Q |
| |
|
||||||| || ||||| ||||||||||||||| || ||||| |||||||| |||||||| ||||| || | | |||||||||||||||||| | || |
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|
| T |
47713584 |
acctccgcggcgttcgcggtaccggcaagtccgatcgtgaaggtttctacgccgctgctctttggtttcaccactaccaccctaaaaccctagcttctaa |
47713485 |
T |
|
| Q |
101 |
tgttccttctctcgctgactttggctacttcaaagatctccctgagatcctctaccgtcttct |
163 |
Q |
| |
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|| ||||| || ||||||||||| ||||||||||||||||| || ||||| ||||||||||| |
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|
| T |
47713484 |
cgtcccttcccttgctgactttggttacttcaaagatctcccagaaatcctttaccgtcttct |
47713422 |
T |
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