View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1583_high_3 (Length: 506)

Name: NF1583_high_3
Description: NF1583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1583_high_3
NF1583_high_3
[»] chr5 (4 HSPs)
chr5 (12-506)||(35364184-35364676)
chr5 (46-92)||(35404427-35404473)
chr5 (46-92)||(35752663-35752709)
chr5 (46-82)||(35364706-35364742)
[»] chr1 (5 HSPs)
chr1 (16-181)||(10422306-10422471)
chr1 (411-489)||(10421992-10422070)
chr1 (179-236)||(10422133-10422190)
chr1 (46-92)||(10412265-10412311)
chr1 (46-92)||(10417988-10418034)
[»] chr2 (3 HSPs)
chr2 (46-84)||(30669548-30669586)
chr2 (46-83)||(30633139-30633176)
chr2 (46-83)||(30660868-30660905)


Alignment Details
Target: chr5 (Bit Score: 460; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 12 - 506
Target Start/End: Original strand, 35364184 - 35364676
Alignment:
Q  12 atgaatgattaagtgttaattacatttttatcccctttgcttgctttgaaggaaaagcttaaaaatggtgtacaagattctcggctgatgacggtccctt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35364184 atgaatgattaagtgttaattacatttttatcccctttgcttgctttgaaggaaaagcttaaaaatggtgtacaagattctcggctgatgacggtccctt 35364283  T
Q  112 gtatagtatttttagcactaataaggagtcattttagagttaatttgacaagttttaaaatgttttagtttagtgtctaaaatgaaccgtctaatttaaa 211  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35364284 gtatagtatttttagcactaacaaggagtcattttagagttaatttgataagttttaaaatgttttagtttagtgtctaaaatgaaccgtctaatttaaa 35364383  T
Q  212 attaatggttgggatttaaaacagctatagcttgcgatgaatatcacattcctgttttaagtcaacaagagtagtatgacatggattccacaacttgttg 311  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35364384 attaatggttgggatttaaaacagctatagcttgcaatgaatatcacattcctgttttaagtcaacaagagtagtatgacatggattccacaacttgttg 35364483  T
Q  312 attttgggaccacaaagcacctatctattgcacatgactacttctctttaaataaccaaccatatatctttgatctatatcaaaatacatattcttcaat 411  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  35364484 attttgggaccacaaagcatctatctattgcacatgactacttctctttaaataaccaaccatatatctttgatc--tatcaaaatacatattcttcaat 35364581  T
Q  412 agaaaaatgaggacttttatgtcgatattttttctttgctttgctagccaaattttgttgcattatttcctgtcatcagcacttacttttgcttt 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  35364582 agaaaaatgaggacttttatgtcgatattttttctttgctttgctagccaaattttgttgcattatttcctgtcatcagcaattactgttgcttt 35364676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 46 - 92
Target Start/End: Original strand, 35404427 - 35404473
Alignment:
Q  46 ctttgcttgctttgaaggaaaagcttaaaaatggtgtacaagattct 92  Q
    |||||||||| |||||||||||||||| ||||||||||| |||||||    
T  35404427 ctttgcttgcattgaaggaaaagcttacaaatggtgtaccagattct 35404473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 46 - 92
Target Start/End: Original strand, 35752663 - 35752709
Alignment:
Q  46 ctttgcttgctttgaaggaaaagcttaaaaatggtgtacaagattct 92  Q
    ||||||||||||| ||||||||||||| ||||||||||| |||||||    
T  35752663 ctttgcttgctttaaaggaaaagcttacaaatggtgtaccagattct 35752709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 46 - 82
Target Start/End: Original strand, 35364706 - 35364742
Alignment:
Q  46 ctttgcttgctttgaaggaaaagcttaaaaatggtgt 82  Q
    |||||||||||||||| |||||||||| |||||||||    
T  35364706 ctttgcttgctttgaaagaaaagcttacaaatggtgt 35364742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 142; Significance: 3e-74; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 16 - 181
Target Start/End: Complemental strand, 10422471 - 10422306
Alignment:
Q  16 atgattaagtgttaattacatttttatcccctttgcttgctttgaaggaaaagcttaaaaatggtgtacaagattctcggctgatgacggtcccttgtat 115  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  10422471 atgattaagtgttaattacatttttatctcctttgcttgctttgaaggaaaagcttaaaaatggtgtacaagattctcggctgatgacggtccattgtat 10422372  T
Q  116 agtatttttagcactaataaggagtcattttagagttaatttgacaagttttaaaatgttttagtt 181  Q
    ||||||||||||| | |||||||||||||||||||  |||||||||||||||||||||||||||||    
T  10422371 agtatttttagcattgataaggagtcattttagaggcaatttgacaagttttaaaatgttttagtt 10422306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 411 - 489
Target Start/End: Complemental strand, 10422070 - 10421992
Alignment:
Q  411 tagaaaaatgaggacttttatgtcgatattttttctttgctttgctagccaaattttgttgcattatttcctgtcatca 489  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  10422070 tagaaaaatgaggacttatatgtcgatattttttctttgctttgctagccaaattttggtgtattatttcctgtcatca 10421992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 179 - 236
Target Start/End: Complemental strand, 10422190 - 10422133
Alignment:
Q  179 gtttagtgtctaaaatgaaccgtctaatttaaaattaatggttgggatttaaaacagc 236  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  10422190 gtttagtgtctaatatgaaccgtctaatttaaaattaatggttgggatttaaaacagc 10422133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 46 - 92
Target Start/End: Complemental strand, 10412311 - 10412265
Alignment:
Q  46 ctttgcttgctttgaaggaaaagcttaaaaatggtgtacaagattct 92  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||    
T  10412311 ctttgcttgctttgaaggaaaagcttacaaatggtgtacaagattct 10412265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 46 - 92
Target Start/End: Complemental strand, 10418034 - 10417988
Alignment:
Q  46 ctttgcttgctttgaaggaaaagcttaaaaatggtgtacaagattct 92  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||    
T  10418034 ctttgcttgctttgaaggaaaagcttacaaatggtgtaccagattct 10417988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 46 - 84
Target Start/End: Original strand, 30669548 - 30669586
Alignment:
Q  46 ctttgcttgctttgaaggaaaagcttaaaaatggtgtac 84  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  30669548 ctttgcttgctttgaaggaaaagcttacaaatggtgtac 30669586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 46 - 83
Target Start/End: Original strand, 30633139 - 30633176
Alignment:
Q  46 ctttgcttgctttgaaggaaaagcttaaaaatggtgta 83  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  30633139 ctttgcttgctttgaaggaaaagcttacaaatggtgta 30633176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 46 - 83
Target Start/End: Original strand, 30660868 - 30660905
Alignment:
Q  46 ctttgcttgctttgaaggaaaagcttaaaaatggtgta 83  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  30660868 ctttgcttgctttgaaggaaaagcttacaaatggtgta 30660905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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