View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1583_high_33 (Length: 309)

Name: NF1583_high_33
Description: NF1583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1583_high_33
NF1583_high_33
[»] chr3 (2 HSPs)
chr3 (7-298)||(11623226-11623511)
chr3 (6-78)||(25317871-25317943)
[»] chr7 (5 HSPs)
chr7 (6-78)||(3267578-3267650)
chr7 (6-78)||(26871837-26871909)
chr7 (1-42)||(44452045-44452086)
chr7 (6-78)||(17255371-17255443)
chr7 (6-58)||(34299731-34299783)
[»] chr6 (2 HSPs)
chr6 (1-77)||(23344633-23344709)
chr6 (1-78)||(29716732-29716809)
[»] chr8 (9 HSPs)
chr8 (1-78)||(32133663-32133740)
chr8 (6-57)||(1876471-1876522)
chr8 (9-78)||(14016835-14016904)
chr8 (6-78)||(30486675-30486748)
chr8 (3-51)||(8350206-8350254)
chr8 (6-78)||(12002333-12002405)
chr8 (1-57)||(31844206-31844262)
chr8 (1-49)||(35501064-35501112)
chr8 (6-78)||(36907866-36907938)
[»] chr4 (1 HSPs)
chr4 (11-78)||(20022261-20022328)
[»] chr2 (1 HSPs)
chr2 (3-49)||(28695609-28695655)
[»] chr5 (1 HSPs)
chr5 (1-30)||(28639614-28639643)
[»] chr1 (1 HSPs)
chr1 (3-31)||(27934743-27934771)


Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 7 - 298
Target Start/End: Complemental strand, 11623511 - 11623226
Alignment:
Q  7 ttacacaaacttttataaaaaa-ttactgttgaaagtgcttaaccaatgccccaaggacactggttaacatttgcctgaaggaaaatgggggtttctttg 105  Q
    ||||||||||||| |||||||| ||||  |||||||||||| ||||||| ||||  |||||| |||||||||| ||||||||||||||||| ||||||||    
T  11623511 ttacacaaactttaataaaaaaattaccattgaaagtgctttaccaatgtcccagagacactagttaacatttccctgaaggaaaatgggg-tttctttg 11623413  T
Q  106 ttttacatgattttggcacactgcagaagaatcaatgcatactgtggctaataattcacaatttctctaatcatgaacatcacaagaggaatctcctttt 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  11623412 ttttacatgattttggcacactgcagaagaatcaatgcatactgtggctaataattcacaatttctctaaacatgaacatcacaagaggaatctcctttt 11623313  T
Q  206 tccaaaagattgtaaaagaagtccaaaactagaatataaccacacacaataaacacataattagtggataatggatactcttgtcatattcat 298  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||| ||||||||||||||||||||||||    ||||||||||||||    
T  11623312 tccaaaagattgtaaaagaagtccaaaact--aatataaccacacacaatgaacacataattagtggataatgga----cttgtcatattcat 11623226  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 6 - 78
Target Start/End: Original strand, 25317871 - 25317943
Alignment:
Q  6 attacacaaacttttataaaaaattactgttgaaagtgcttaaccaatgccccaaggacactggttaacattt 78  Q
    |||||||||||||||||||||| ||||| || || || |||||||| ||||||   |||||||||||||||||    
T  25317871 attacacaaacttttataaaaatttactatttaaggtccttaaccagtgccccggagacactggttaacattt 25317943  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 6 - 78
Target Start/End: Complemental strand, 3267650 - 3267578
Alignment:
Q  6 attacacaaacttttataaaaaattactgttgaaagtgcttaaccaatgccccaaggacactggttaacattt 78  Q
    |||||||||||||||||||||| || || ||  | || |||||||| |||||| |||||||||||||||||||    
T  3267650 attacacaaacttttataaaaacttgctattttaggtccttaaccagtgcccctaggacactggttaacattt 3267578  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 6 - 78
Target Start/End: Original strand, 26871837 - 26871909
Alignment:
Q  6 attacacaaacttttataaaaaattactgttgaaagtgcttaaccaatgccccaaggacactggttaacattt 78  Q
    |||||||||||||||||||||||||||| || || || |||||||| | ||||||| ||| | ||||||||||    
T  26871837 attacacaaacttttataaaaaattactatttaaggtccttaaccagtaccccaagaacattagttaacattt 26871909  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 44452086 - 44452045
Alignment:
Q  1 actttattacacaaacttttataaaaaattactgttgaaagt 42  Q
    ||||||||||||||||||| ||||||||||||| || |||||    
T  44452086 actttattacacaaactttcataaaaaattactatttaaagt 44452045  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 78
Target Start/End: Original strand, 17255371 - 17255443
Alignment:
Q  6 attacacaaacttttataaaaaattactgttgaaagtgcttaaccaatgccccaaggacactggttaacattt 78  Q
    ||||| |||||||||||||||||||||| || || || |||||| | |||| || || |||| ||||||||||    
T  17255371 attacgcaaacttttataaaaaattactatttaaggtccttaacaagtgcctcaggggcactagttaacattt 17255443  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 58
Target Start/End: Complemental strand, 34299783 - 34299731
Alignment:
Q  6 attacacaaacttttataaaaaattactgttgaaagtgcttaaccaatgcccc 58  Q
    |||||||||||||| ||||||| ||||| || || || |||||||||||||||    
T  34299783 attacacaaactttcataaaaagttactatttaaggtccttaaccaatgcccc 34299731  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 23344633 - 23344709
Alignment:
Q  1 actttattacacaaacttttataaaaaattactgttgaaagtgcttaaccaatgccccaaggacactggttaacatt 77  Q
    ||||||||||||||||||||||||||| ||||  || ||||||| |||||| ||||||  || |||| |||||||||    
T  23344633 actttattacacaaacttttataaaaagttaccatttaaagtgcataaccagtgccccgggggcactcgttaacatt 23344709  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 29716809 - 29716732
Alignment:
Q  1 actttattacacaaacttttataaaaaattactgttgaaagtgcttaaccaatgccccaaggacactggttaacattt 78  Q
    ||||||||||||||||||| ||||||  ||||  || ||||| |||||||| ||||||  || |||| ||||||||||    
T  29716809 actttattacacaaactttcataaaaggttaccatttaaagtccttaaccagtgccccgggggcactagttaacattt 29716732  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 32133740 - 32133663
Alignment:
Q  1 actttattacacaaacttttataaaaaattactgttgaaagtgcttaaccaatgccccaaggacactggttaacattt 78  Q
    ||||||||||||||||||| ||||||||||||| || ||| | |||||||| ||| ||  || |||| ||||||||||    
T  32133740 actttattacacaaactttcataaaaaattactatttaaattccttaaccagtgctccgggggcactagttaacattt 32133663  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 6 - 57
Target Start/End: Complemental strand, 1876522 - 1876471
Alignment:
Q  6 attacacaaacttttataaaaaattactgttgaaagtgcttaaccaatgccc 57  Q
    |||||||||||||| ||||||||||||  || ||||| ||||||||||||||    
T  1876522 attacacaaactttcataaaaaattaccatttaaagtccttaaccaatgccc 1876471  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 78
Target Start/End: Complemental strand, 14016904 - 14016835
Alignment:
Q  9 acacaaacttttataaaaaattactgttgaaagtgcttaaccaatgccccaaggacactggttaacattt 78  Q
    ||||||||||||||||||||||||| || || || |||||| | ||||||  || |||| ||||||||||    
T  14016904 acacaaacttttataaaaaattactatttaaggtccttaactagtgccccgggggcactagttaacattt 14016835  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 78
Target Start/End: Original strand, 30486675 - 30486748
Alignment:
Q  6 attacacaaacttttat-aaaaaattactgttgaaagtgcttaaccaatgccccaaggacactggttaacattt 78  Q
    ||||||||||||||||| ||||||||||| || ||||| |||||||| | |||| ||| |||| ||||| ||||    
T  30486675 attacacaaacttttataaaaaaattactatttaaagtccttaaccagtaccccgagggcactagttaatattt 30486748  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 8350254 - 8350206
Alignment:
Q  3 tttattacacaaacttttataaaaaattactgttgaaagtgcttaacca 51  Q
    |||||||||||||||||||||||||  |||| || ||||| ||||||||    
T  8350254 tttattacacaaacttttataaaaagatactatttaaagttcttaacca 8350206  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 78
Target Start/End: Original strand, 12002333 - 12002405
Alignment:
Q  6 attacacaaacttttataaaaaattactgttgaaagtgcttaaccaatgccccaaggacactggttaacattt 78  Q
    |||||||||| ||||||||||| ||||| || ||  | |||||||| ||||||  ||||||| ||||||||||    
T  12002333 attacacaaatttttataaaaagttactatttaagatccttaaccagtgccccgtggacactagttaacattt 12002405  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 31844262 - 31844206
Alignment:
Q  1 actttattacacaaacttttataaaaaattactgttgaaagtgcttaaccaatgccc 57  Q
    |||| |||| ||||||||| ||||||| ||||| || ||||| ||||||||||||||    
T  31844262 acttcattatacaaactttcataaaaagttactatttaaagtccttaaccaatgccc 31844206  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 35501112 - 35501064
Alignment:
Q  1 actttattacacaaacttttataaaaaattactgttgaaagtgcttaac 49  Q
    ||||||||||||||||||||||||||| ||| | || ||||| ||||||    
T  35501112 actttattacacaaacttttataaaaatttaatatttaaagtccttaac 35501064  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 78
Target Start/End: Original strand, 36907866 - 36907938
Alignment:
Q  6 attacacaaacttttataaaaaattactgttgaaagtgcttaaccaatgccccaaggacactggttaacattt 78  Q
    |||||||||||||||||||||| ||||| || ||||| |||| | | ||||||  || |||| ||||||||||    
T  36907866 attacacaaacttttataaaaagttactatttaaagtccttagctagtgcccccggggcactagttaacattt 36907938  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 20022261 - 20022328
Alignment:
Q  11 acaaacttttataaaaaattactgttgaaagtgcttaaccaatgccccaaggacactggttaacattt 78  Q
    ||||||||| ||||||||||||| || || || |||||||| ||||||| || |||| ||||||||||    
T  20022261 acaaactttcataaaaaattactatttaaggtccttaaccagtgccccaggggcactcgttaacattt 20022328  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 28695655 - 28695609
Alignment:
Q  3 tttattacacaaacttttataaaaaattactgttgaaagtgcttaac 49  Q
    ||||||||||||||||||||||||| ||||| || |||||| |||||    
T  28695655 tttattacacaaacttttataaaaagttactatttaaagtgtttaac 28695609  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 28639614 - 28639643
Alignment:
Q  1 actttattacacaaacttttataaaaaatt 30  Q
    ||||||||||||||||||||||||||||||    
T  28639614 actttattacacaaacttttataaaaaatt 28639643  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 31
Target Start/End: Complemental strand, 27934771 - 27934743
Alignment:
Q  3 tttattacacaaacttttataaaaaatta 31  Q
    |||||||||||||||||||||||||||||    
T  27934771 tttattacacaaacttttataaaaaatta 27934743  T

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