View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1583_high_4 (Length: 472)
Name: NF1583_high_4
Description: NF1583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1583_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 6 - 453
Target Start/End: Original strand, 3526963 - 3527413
Alignment:
| Q |
6 |
agtgagatgaagaggattttacctgggggctgcaatgacgacaggggaagagttggagaagaagctgaaaatttccaattacgaaatatcaggatataaa |
105 |
Q |
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| T |
3526963 |
agtgaaatgaagaggattttacctgggggctgcaatgacgacaggggaagagttggagaagaagctgaaaatttccaataaggaaatatcaggatataaa |
3527062 |
T |
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| Q |
106 |
tgcatggattgatgtaatctcattattattataaattgaattgatgaaagtagtgtactta----tatggtagaattggaaaataaaaaagtaatat-cc |
200 |
Q |
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| T |
3527063 |
tgcatgtattgatgtaatctcattattattataaattgaattgatgaaagtagtgtacttaattatatggtagaattggaaaataaaaaagtaatattcc |
3527162 |
T |
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| Q |
201 |
tctaaaaatcaaannnnnnnncttcttcaatgggtcagtcgatttaggacggaagaagtattaaatatgttttcatttcacatacctatgcaggagctgg |
300 |
Q |
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| T |
3527163 |
tctaaaaatcaatttttttt--ttcttcaatgggtcagtcgatttaggacggaagaagtattaaatatgttttcatttcacatacctatgcaggagctgg |
3527260 |
T |
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| Q |
301 |
tattgaagttgataccacataagtatataacttggaaaacctgagtaattttcaaaccaaaagcttcaaataagccataagctgcgataagttgacagaa |
400 |
Q |
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| T |
3527261 |
tattgaagttgataccacataagtatataacttggaaaacctgagtaattttcaaaccaaaagcttcaaataagccataagctgcgataagttgacagaa |
3527360 |
T |
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| Q |
401 |
acatgttttgtgggttgcatatagatctttaattggattgcagcaaatgtctg |
453 |
Q |
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| T |
3527361 |
acatgttttgtgggttgcatatagatctttaattggattgcagcaaatgtctg |
3527413 |
T |
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