View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1583_high_40 (Length: 294)
Name: NF1583_high_40
Description: NF1583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1583_high_40 |
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Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 17 - 279
Target Start/End: Complemental strand, 49424018 - 49423757
Alignment:
| Q |
17 |
actaatgacaggtttgtatcaactgctccttgaatacttagtatgcctgtggagaaccgagaaactcacgtcttataggtctaataaattcaaaaaataa |
116 |
Q |
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| T |
49424018 |
actaatgacaggtttgtatcaactgctccttgaatacttagtatgcctgtggagaaccgagaaactcacgtcttataggtctaataaattcaaaaaataa |
49423919 |
T |
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| Q |
117 |
tggaaatgagaatcaagcttttgaactgtcttaacaagccatttggggaagcttgttcagtgttttaattcaattgttcaaccttcattttaaacttaaa |
216 |
Q |
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| T |
49423918 |
tggaa-tgagaatcaagcttttgaactgtcttaacaagccatttggggaagcttgttcagtgttttaattcaattgttcaaccttcattttaaacttaaa |
49423820 |
T |
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| Q |
217 |
gatggagatggttgatagattcaactttcaagacattagggataacattttttatgctcgtac |
279 |
Q |
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| T |
49423819 |
gttggagatggttgatagattcaactttcaagacattagggataacattttttatgctcgtac |
49423757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 121 - 268
Target Start/End: Original strand, 43363148 - 43363293
Alignment:
| Q |
121 |
aatgagaatcaagcttttgaactgtcttaacaagccatttggggaagcttgttcagtgttttaattcaattgttcaaccttcattttaaacttaaagatg |
220 |
Q |
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| T |
43363148 |
aatgagaaggaagtttttgaattgtcttaatgagtcatttggggaagcttgtttagtgtttcacttcaattgttcaacaaccagtttaaact--atgtag |
43363245 |
T |
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| Q |
221 |
gagatggttgatagattcaactttcaagacattagggataacattttt |
268 |
Q |
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| T |
43363246 |
gagatgattaatagattcaactttcaagacataagggataacattttt |
43363293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 132 - 275
Target Start/End: Complemental strand, 49426060 - 49425917
Alignment:
| Q |
132 |
agcttttgaactgtcttaacaagccatttggggaagcttgttcagtgttttaattcaattgttcaaccttcattttaaacttaaagatggagatggttga |
231 |
Q |
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| T |
49426060 |
agcttttgaactgtcttaatgaatcatttggggaaacttgttcagcttttcaattcaatagttcaacctctagtttaaactaaatgtatgagatggttca |
49425961 |
T |
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| Q |
232 |
tagattcaactttcaagacattagggataacattttttatgctc |
275 |
Q |
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| T |
49425960 |
tagtttcaactttcaagacattagggatagcatttcttacgctc |
49425917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 262
Target Start/End: Complemental strand, 17641030 - 17640992
Alignment:
| Q |
224 |
atggttgatagattcaactttcaagacattagggataac |
262 |
Q |
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| T |
17641030 |
atggttgatagattcaactttcaagaatttagggataac |
17640992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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