View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1583_high_42 (Length: 286)
Name: NF1583_high_42
Description: NF1583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1583_high_42 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 11 - 269
Target Start/End: Original strand, 18642678 - 18642936
Alignment:
| Q |
11 |
cacagacgcacacacacaaaaattaaaacatgtttcaaatctcattaagtcattcaacttaatgttacgtatccatgaccaagaaaccaaagcaactaaa |
110 |
Q |
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| T |
18642678 |
cacacacgcacacacacaaaaattaaaacatgtttcaaatctcattaagtcattcaacttaatgttacgtatccatgaccaagaaaccaaagcaactaaa |
18642777 |
T |
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| Q |
111 |
agaccttttgttgtattactagagccatctgtgaccgggatcttcagtatactgcactggatagaggacagctaagatctaacctgcaaccaaagtacag |
210 |
Q |
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| T |
18642778 |
agaccttttgttgtattactagagccatctgtgaccgggatcttcagtatactgcactggatagaggacagcaaagatctaacctgcaaccaaagtacag |
18642877 |
T |
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| Q |
211 |
tgattcacatctaaacatatagaataatatacttttgaaacatctgtttccactaatat |
269 |
Q |
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| T |
18642878 |
tgattcacatctaaacatatagaataatatacttttgaaacatctgtttccactaatat |
18642936 |
T |
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