View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1583_high_43 (Length: 286)

Name: NF1583_high_43
Description: NF1583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1583_high_43
NF1583_high_43
[»] chr5 (9 HSPs)
chr5 (17-286)||(35364660-35364929)
chr5 (48-267)||(35752636-35752855)
chr5 (46-267)||(35404400-35404621)
chr5 (50-236)||(35374256-35374442)
chr5 (21-266)||(35421488-35421733)
chr5 (21-266)||(35434833-35435078)
chr5 (155-236)||(35384038-35384116)
chr5 (213-266)||(35417009-35417062)
chr5 (204-240)||(35364218-35364254)
[»] chr1 (4 HSPs)
chr1 (17-286)||(10421730-10421988)
chr1 (43-280)||(10417837-10418074)
chr1 (17-281)||(10412088-10412352)
chr1 (204-240)||(10422405-10422441)
[»] chr2 (4 HSPs)
chr2 (17-267)||(30633112-30633362)
chr2 (17-267)||(30660841-30661091)
chr2 (17-267)||(30669521-30669771)
chr2 (17-220)||(30631054-30631257)
[»] chr8 (1 HSPs)
chr8 (43-241)||(13563209-13563407)
[»] chr7 (1 HSPs)
chr7 (48-276)||(29625273-29625493)
[»] chr3 (1 HSPs)
chr3 (27-241)||(1153059-1153274)


Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 17 - 286
Target Start/End: Complemental strand, 35364929 - 35364660
Alignment:
Q  17 caagtcgacgtttgaaaggtagagttttctaagaaatgttagatttcccaatgatggtccgagagtaccacccaatatttgattctccaaatgcaaagaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35364929 caagtcgacgtttgaaaggtagagttttctaagaaatgttagatttcccaatgatggtccgagagtaccacccaatatttgattctccaaatgcaaagaa 35364830  T
Q  117 atgactctcatgtgacgacgaccacatgtaatcccttgccattcacagaaatgtagagactcattccatgatggcagagaatcagacacaccatttgtaa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35364829 atgactctcatgtgacgacgaccacatgtaatcccttgccattcacagaaatgtagagactcattccatgatggcagagaatcagacacaccatttgtaa 35364730  T
Q  217 gcttttctttcaaagcaagcaaagcaaatttatcagtctgtgaactcaaagcaaaagcaacagtaattgc 286  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  35364729 gcttttctttcaaagcaagcaaagcaagtttatcagtctgtgaactcaaagcaaaagcaacagtaattgc 35364660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 48 - 267
Target Start/End: Complemental strand, 35752855 - 35752636
Alignment:
Q  48 agaaatgttagatttcccaatgatggtccgagagtaccacccaatatttgattctccaaatgcaaagaaatgactctcatgtgacgacgaccacatgtaa 147  Q
    |||||||||| ||| ||||| |||||||| ||||| ||||||||| ||||||| ||||||||||| |||  |||||||||||||||||||||||||||||    
T  35752855 agaaatgttaaattacccaaagatggtccaagagtgccacccaatgtttgattttccaaatgcaaggaagagactctcatgtgacgacgaccacatgtaa 35752756  T
Q  148 tcccttgccattcacagaaatgtagagactcattccatgatggcagagaatcagacacaccatttgtaagcttttctttcaaagcaagcaaagcaaattt 247  Q
    ||||||||||  ||||||||||||||||||||||||||||||||| |||||| |  |||||||||||||||||||| || ||||||||||||||||  ||    
T  35752755 tcccttgccacacacagaaatgtagagactcattccatgatggcaaagaatctggtacaccatttgtaagcttttcctttaaagcaagcaaagcaagctt 35752656  T
Q  248 atcagtctgtgaactcaaag 267  Q
    ||||||||| ||||||||||    
T  35752655 atcagtctgcgaactcaaag 35752636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 46 - 267
Target Start/End: Complemental strand, 35404621 - 35404400
Alignment:
Q  46 taagaaatgttagatttcccaatgatggtccgagagtaccacccaatatttgattctccaaatgcaaagaaatgactctcatgtgacgacgaccacatgt 145  Q
    ||||||| ||||||||||||||||||||||| ||||| ||||||||| ||||||| |||||| |||| | |  ||||||| ||||| |||||||||||||    
T  35404621 taagaaaggttagatttcccaatgatggtccaagagtgccacccaatgtttgattttccaaacgcaaggcagagactctcgtgtgatgacgaccacatgt 35404522  T
Q  146 aatcccttgccattcacagaaatgtagagactcattccatgatggcagagaatcagacacaccatttgtaagcttttctttcaaagcaagcaaagcaaat 245  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||| |||||| |  |||||||||||||||||||| ||||| ||||||||||| |      
T  35404521 aatcccttgccattcacaaaaatgtagagacttattccatgatggcaaagaatctggtacaccatttgtaagcttttccttcaatgcaagcaaagccagc 35404422  T
Q  246 ttatcagtctgtgaactcaaag 267  Q
    |||||||||| |||||||||||    
T  35404421 ttatcagtctttgaactcaaag 35404400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 50 - 236
Target Start/End: Complemental strand, 35374442 - 35374256
Alignment:
Q  50 aaatgttagatttcccaatgatggtccgagagtaccacccaatatttgattctccaaatgcaaagaaatgactctcatgtgacgacgaccacatgtaatc 149  Q
    ||||||||||||||||||||||||||||||||| ||||||| | ||||||| ||||||||||| | |  |||||||||||||||||||||||||||||      
T  35374442 aaatgttagatttcccaatgatggtccgagagtgccacccagtgtttgattttccaaatgcaaggcagagactctcatgtgacgacgaccacatgtaact 35374343  T
Q  150 ccttgccattcacagaaatgtagagactcattccatgatggcagagaatcagacacaccatttgtaagcttttctttcaaagcaagc 236  Q
    |||||||||||||||||||||| |||||||||||||||||| ||||| || |  ||||||||||| |||||||| ||||||||||||    
T  35374342 ccttgccattcacagaaatgtaaagactcattccatgatggaagagagtctggtacaccatttgtgagcttttccttcaaagcaagc 35374256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 21 - 266
Target Start/End: Complemental strand, 35421733 - 35421488
Alignment:
Q  21 tcgacgtttgaaaggtagagttttctaagaaatgttagatttcccaatgatggtccgagagtaccacccaatatttgattctccaaatgcaaagaaatga 120  Q
    |||| ||| ||||| | ||||||||| ||||| ||||||||||| || |||||||| |||||||||||| |  ||||||| |||||||||||   |  ||    
T  35421733 tcgatgttggaaagtttgagttttctgagaaaggttagatttcctaaggatggtccaagagtaccaccccaattttgattttccaaatgcaagacagaga 35421634  T
Q  121 ctctcatgtgacgacgaccacatgtaatcccttgccattcacagaaatgtagagactcattccatgatggcagagaatcagacacaccatttgtaagctt 220  Q
    |||||||||| || ||||| |||||||  || | ||||||||||||||| ||||| |||||||||||||| |||| |||||  | |||||| ||||| ||    
T  35421633 ctctcatgtggcgtcgaccgcatgtaacaccctcccattcacagaaatgaagagattcattccatgatggaagagcatcaggtataccattggtaagttt 35421534  T
Q  221 ttctttcaaagcaagcaaagcaaatttatcagtctgtgaactcaaa 266  Q
    ||||||||||| ||||||||||  ||||||||||  ||||||||||    
T  35421533 ttctttcaaagaaagcaaagcatgtttatcagtcactgaactcaaa 35421488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 21 - 266
Target Start/End: Complemental strand, 35435078 - 35434833
Alignment:
Q  21 tcgacgtttgaaaggtagagttttctaagaaatgttagatttcccaatgatggtccgagagtaccacccaatatttgattctccaaatgcaaagaaatga 120  Q
    |||| ||| ||||| | ||||||||| ||||| ||||||||||| || |||||||| |||||||||||| |  ||||||| |||||||||||   |  ||    
T  35435078 tcgatgttggaaagtttgagttttctgagaaaggttagatttcctaaggatggtccaagagtaccaccccaattttgattttccaaatgcaagacagaga 35434979  T
Q  121 ctctcatgtgacgacgaccacatgtaatcccttgccattcacagaaatgtagagactcattccatgatggcagagaatcagacacaccatttgtaagctt 220  Q
    |||||||||| || ||||| |||||||  || | ||||||||||||||  ||||| |||||||||||||| |||| |||||  | |||||| ||||| ||    
T  35434978 ctctcatgtggcgtcgaccgcatgtaacaccctcccattcacagaaataaagagattcattccatgatggaagagcatcaggtataccattggtaagttt 35434879  T
Q  221 ttctttcaaagcaagcaaagcaaatttatcagtctgtgaactcaaa 266  Q
    ||||||||||| ||||||||||  ||||||||||  ||||||||||    
T  35434878 ttctttcaaagaaagcaaagcatgtttatcagtcactgaactcaaa 35434833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 236
Target Start/End: Complemental strand, 35384116 - 35384038
Alignment:
Q  155 ccattcacagaaatgtagagactcattccatgatggcagagaatcagacacaccatttgtaagcttttctttcaaagcaagc 236  Q
    |||||||||||||| ||   |||||||||||||||| |||||||| |  || |||||||| |||||||| ||||||||||||    
T  35384116 ccattcacagaaatata---actcattccatgatggaagagaatctggtacgccatttgtgagcttttccttcaaagcaagc 35384038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 266
Target Start/End: Complemental strand, 35417062 - 35417009
Alignment:
Q  213 gtaagcttttctttcaaagcaagcaaagcaaatttatcagtctgtgaactcaaa 266  Q
    |||||||||||||| |||| ||||||||||  ||||||||||  ||||||||||    
T  35417062 gtaagcttttcttttaaagaaagcaaagcatgtttatcagtcactgaactcaaa 35417009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 240
Target Start/End: Complemental strand, 35364254 - 35364218
Alignment:
Q  204 acaccatttgtaagcttttctttcaaagcaagcaaag 240  Q
    ||||||||| |||||||||| ||||||||||||||||    
T  35364254 acaccatttttaagcttttccttcaaagcaagcaaag 35364218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 159; Significance: 1e-84; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 17 - 286
Target Start/End: Original strand, 10421730 - 10421988
Alignment:
Q  17 caagtcgacgtttgaaaggtagagttttctaagaaatgttagatttcccaatgatggtccgagagtaccacccaatatttgattctccaaatgcaaagaa 116  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||  ||||||||||| |||||||||| ||||||||||||    
T  10421730 caagtcaacgtttgaaaggtagagttttctaagaaatgttagatttctcaatgatggtccgag--taccacccaatgtttgattctcgaaatgcaaagaa 10421827  T
Q  117 atgactctcatgtgacgacgaccacatgtaatcccttgccattcacagaaatgtagagactcattccatgatggcagagaatcagacacaccatttgtaa 216  Q
    ||||||||||||||||||| ||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||| |||||| |  |||||||||||||    
T  10421828 atgactctcatgtgacgactaccacatgtaatcccctgccactcacagaaatatagagactcattccatgatggcaaagaatctggtacaccatttgtaa 10421927  T
Q  217 gcttttctttcaaagcaagcaaagcaaatttatcagtctgtgaactcaaagcaaaagcaacagtaattgc 286  Q
    || |||||||||||||||||         ||||||||| ||||||||||||| | |||||||||| ||||    
T  10421928 gcgtttctttcaaagcaagc---------ttatcagtccgtgaactcaaagctagagcaacagtagttgc 10421988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 43 - 280
Target Start/End: Original strand, 10417837 - 10418074
Alignment:
Q  43 ttctaagaaatgttagatttcccaatgatggtccgagagtaccacccaatatttgattctccaaatgcaaagaaatgactctcatgtgacgacgaccaca 142  Q
    |||| |||||||||||||||||||| |||||||| ||||||||||||||| ||||||| ||||||||||| |||  ||||||||||||||||||||||||    
T  10417837 ttctgagaaatgttagatttcccaaggatggtccaagagtaccacccaatgtttgattttccaaatgcaaggaagagactctcatgtgacgacgaccaca 10417936  T
Q  143 tgtaatcccttgccattcacagaaatgtagagactcattccatgatggcagagaatcagacacaccatttgtaagcttttctttcaaagcaagcaaagca 242  Q
    | ||||||||||||| |||||||||||||||||||||||| ||||||||| |||||| |  |||||||||||||||||||| ||||||||||||||||||    
T  10417937 tctaatcccttgccaatcacagaaatgtagagactcattctatgatggcaaagaatctggtacaccatttgtaagcttttccttcaaagcaagcaaagca 10418036  T
Q  243 aatttatcagtctgtgaactcaaagcaaaagcaacagt 280  Q
       |||||||||| || ||||||||||  |||||||||    
T  10418037 tgcttatcagtctctgtactcaaagcatgagcaacagt 10418074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 17 - 281
Target Start/End: Original strand, 10412088 - 10412352
Alignment:
Q  17 caagtcgacgtttgaaaggtagagttttctaagaaatgttagatttcccaatgatggtccgagagtaccacccaatatttgattctccaaatgcaaagaa 116  Q
    ||||| ||| |||||||||| |||  ||| ||||||||||||||||||||| |||||||| ||||||||||||||  ||||||| |||||||||||   |    
T  10412088 caagttgacatttgaaaggttgagcattcgaagaaatgttagatttcccaaggatggtccaagagtaccacccaagttttgattttccaaatgcaagaca 10412187  T
Q  117 atgactctcatgtgacgacgaccacatgtaatcccttgccattcacagaaatgtagagactcattccatgatggcagagaatcagacacaccatttgtaa 216  Q
       ||||||||||| |||||||| |||  ||  || |||||||||||||||||||||||||||||||||||||||| ||||||    |||||||||||||    
T  10412188 gaaactctcatgtgtcgacgaccgcattcaactccctgccattcacagaaatgtagagactcattccatgatggcaaagaatcttgtacaccatttgtaa 10412287  T
Q  217 gcttttctttcaaagcaagcaaagcaaatttatcagtctgtgaactcaaagcaaaagcaacagta 281  Q
    ||||||| ||||||||||||||||||   | |||| ||  |||||||||||||| || |||||||    
T  10412288 gcttttccttcaaagcaagcaaagcatgctcatcaatcgctgaactcaaagcaagagtaacagta 10412352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 240
Target Start/End: Original strand, 10422405 - 10422441
Alignment:
Q  204 acaccatttgtaagcttttctttcaaagcaagcaaag 240  Q
    ||||||||| |||||||||| ||||||||||||||||    
T  10422405 acaccatttttaagcttttccttcaaagcaagcaaag 10422441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 139; Significance: 9e-73; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 17 - 267
Target Start/End: Complemental strand, 30633362 - 30633112
Alignment:
Q  17 caagtcgacgtttgaaaggtagagttttctaagaaatgttagatttcccaatgatggtccgagagtaccacccaatatttgattctccaaatgcaaagaa 116  Q
    ||||| ||| |||||||||| |||  ||| ||||||||||||||||||||| |||| ||| ||||| ||||| ||| ||||||| ||||||||||| | |    
T  30633362 caagttgacatttgaaaggttgagcattcgaagaaatgttagatttcccaaggatgatccaagagtgccaccaaatgtttgattttccaaatgcaaggca 30633263  T
Q  117 atgactctcatgtgacgacgaccacatgtaatcccttgccattcacagaaatgtagagactcattccatgatggcagagaatcagacacaccatttgtaa 216  Q
      ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||| || |||||||||||||    
T  30633262 gagactctcatgtgacgacgaccacatgtaatcccttcccattcacagaaatgtagagactcattccatgatggcaaataatctgatacaccatttgtaa 30633163  T
Q  217 gcttttctttcaaagcaagcaaagcaaatttatcagtctgtgaactcaaag 267  Q
    ||||||| ||||||||||||||||| |  |||||||||| |||| ||||||    
T  30633162 gcttttccttcaaagcaagcaaagctagcttatcagtctttgaattcaaag 30633112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 17 - 267
Target Start/End: Complemental strand, 30661091 - 30660841
Alignment:
Q  17 caagtcgacgtttgaaaggtagagttttctaagaaatgttagatttcccaatgatggtccgagagtaccacccaatatttgattctccaaatgcaaagaa 116  Q
    ||||| ||| |||||||||| |||  ||| ||||||||||||||||||||| |||| ||| ||||| ||||| ||| ||||||| ||||||||||| | |    
T  30661091 caagttgacatttgaaaggttgagcattcgaagaaatgttagatttcccaaggatgatccaagagtgccaccaaatgtttgattttccaaatgcaaggca 30660992  T
Q  117 atgactctcatgtgacgacgaccacatgtaatcccttgccattcacagaaatgtagagactcattccatgatggcagagaatcagacacaccatttgtaa 216  Q
      ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||| || |||||||||||||    
T  30660991 gagactctcatgtgacgacgaccacatgtaatcccttcccattcacagaaatgtagagactcattccatgatggcaaataatctgatacaccatttgtaa 30660892  T
Q  217 gcttttctttcaaagcaagcaaagcaaatttatcagtctgtgaactcaaag 267  Q
    ||||||| ||||||||||||||||| |  |||||||||| |||| ||||||    
T  30660891 gcttttccttcaaagcaagcaaagctagcttatcagtctttgaattcaaag 30660841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 17 - 267
Target Start/End: Complemental strand, 30669771 - 30669521
Alignment:
Q  17 caagtcgacgtttgaaaggtagagttttctaagaaatgttagatttcccaatgatggtccgagagtaccacccaatatttgattctccaaatgcaaagaa 116  Q
    ||||| ||| |||||||||  ||| |||  ||||||||||| ||||||||| |||| ||| ||||| ||||| ||| ||||||| ||||||||||| | |    
T  30669771 caagttgacatttgaaaggctgagcttttgaagaaatgttaaatttcccaaggatgatccaagagtgccaccaaatgtttgattttccaaatgcaaggca 30669672  T
Q  117 atgactctcatgtgacgacgaccacatgtaatcccttgccattcacagaaatgtagagactcattccatgatggcagagaatcagacacaccatttgtaa 216  Q
     |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||  |  |||||||||||||    
T  30669671 gtgactctcatgtgacgacgaccacatgtaatcccttcccattcacagaaatgtagagactcattccatgatggcaaataatatggtacaccatttgtaa 30669572  T
Q  217 gcttttctttcaaagcaagcaaagcaaatttatcagtctgtgaactcaaag 267  Q
    ||||||| ||||||||||||||||| |  |||||||||| |||| ||||||    
T  30669571 gcttttccttcaaagcaagcaaagccagcttatcagtctttgaattcaaag 30669521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 17 - 220
Target Start/End: Complemental strand, 30631257 - 30631054
Alignment:
Q  17 caagtcgacgtttgaaaggtagagttttctaagaaatgttagatttcccaatgatggtccgagagtaccacccaatatttgattctccaaatgcaaagaa 116  Q
    ||||| ||| |||||||||| |||  ||| ||||||||||||||||||||| |||| ||| ||||| ||||| ||| ||||||| ||||||||||| | |    
T  30631257 caagttgacatttgaaaggttgagcattcgaagaaatgttagatttcccaaggatgatccaagagtgccaccaaatgtttgattttccaaatgcaaggca 30631158  T
Q  117 atgactctcatgtgacgacgaccacatgtaatcccttgccattcacagaaatgtagagactcattccatgatggcagagaatcagacacaccatttgtaa 216  Q
      ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||| |  |||||||||||||    
T  30631157 gagactctcatgtgacgacgaccacatgtaatcccttcccattcacagaaatgtagagactcattccatgatggcaaataatctggtacaccatttgtaa 30631058  T
Q  217 gctt 220  Q
    ||||    
T  30631057 gctt 30631054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 43 - 241
Target Start/End: Complemental strand, 13563407 - 13563209
Alignment:
Q  43 ttctaagaaatgttagatttcccaatgatggtccgagagtaccacccaatatttgattctccaaatgcaaagaaatgactctcatgtgacgacgaccaca 142  Q
    |||||||||| |||| ||||||||| |||||||| | |||| ||||| || ||||||||| ||||||||| | |  ||||| ||||||||||| ||||||    
T  13563407 ttctaagaaaggttaaatttcccaaggatggtccaaaagtagcaccccatgtttgattcttcaaatgcaaggcagagactcgcatgtgacgaccaccaca 13563308  T
Q  143 tgtaatcccttgccattcacagaaatgtagagactcattccatgatggcagagaatcagacacaccatttgtaagcttttctttcaaagcaagcaaagc 241  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||| | ||| ||||||||||||||||| | |||||||||||||||    
T  13563307 tgtaaccccctgccattcacagaaatgtagagactcattccatgatggtagagaatcgggcacgccatttgtaagcttttcctacaaagcaagcaaagc 13563209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 48 - 276
Target Start/End: Original strand, 29625273 - 29625493
Alignment:
Q  48 agaaatgttagatttcccaatgatggtccgagagtaccacccaatatttgattctccaaatgcaaagaaatgactctcatgtgacgacgaccacatgtaa 147  Q
    ||||| |||||||||||||||||||| || | ||||||||||||| |||| || |||||| ||||        ||||||||||  || || |||||||||    
T  29625273 agaaaggttagatttcccaatgatggcccaatagtaccacccaatgtttggttttccaaacgcaa--------ctctcatgtgtggatgatcacatgtaa 29625364  T
Q  148 tcccttgccattcacagaaatgtagagactcattccatgatggcagagaatcagacacaccatttgtaagcttttctttcaaagcaagcaaagcaaattt 247  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||| ||||||||||| ||||||||||||||||| |  ||    
T  29625365 tcccttgccattcacagaaatgtaaagactcattccatgatggcagagaatccgacaccccattcgtaagcttttccttcaaagcaagcaaagcgagctt 29625464  T
Q  248 atcagtctgtgaactcaaagcaaaagcaa 276  Q
    |||||| | ||||||| ||| || |||||    
T  29625465 atcagtgtctgaactcgaagaaatagcaa 29625493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 27 - 241
Target Start/End: Complemental strand, 1153274 - 1153059
Alignment:
Q  27 tttgaaaggtagagttttctaagaaatgttagatttcccaatgatggtccgagagtaccacccaatatttgattctccaaatgcaaagaaatgactctca 126  Q
    |||||||| | |||| || | |||||||||||||||||||| | | || | |||||||||||| |  |||||||||||||||||||   |  ||||||||    
T  1153274 tttgaaagcttgagtattgttagaaatgttagatttcccaaggctcgttcaagagtaccaccccaggtttgattctccaaatgcaagatagagactctca 1153175  T
Q  127 tgtgacgac-gaccacatgtaatcccttgccattcacagaaatgtagagactcattccatgatggcagagaatcagacacaccatttgtaagcttttctt 225  Q
    |||||  || |||||||| ||| ||||||||||| ||| ||||||||||||||||||||||| ||||||||||||| ||| ||||||||||| ||||  |    
T  1153174 tgtgagcactgaccacatttaaccccttgccatttacaaaaatgtagagactcattccatgacggcagagaatcaggcacgccatttgtaagttttttct 1153075  T
Q  226 tcaaagcaagcaaagc 241  Q
    ||||||||||||||||    
T  1153074 tcaaagcaagcaaagc 1153059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University