View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1583_high_48 (Length: 279)
Name: NF1583_high_48
Description: NF1583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1583_high_48 |
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Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 10 - 260
Target Start/End: Complemental strand, 30250902 - 30250651
Alignment:
| Q |
10 |
attatact-caaagccaaacattaacatcttggtctctctcttacaccaaagtgacatataaaatgttaacagaattttaaaagacggccaaacccaatg |
108 |
Q |
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| T |
30250902 |
attatactgcaaagccaaacattaacatcttggtctctctcttacaccaaagtgacgtatagaatgttaacagaattttaaaagacggccaaacccaatg |
30250803 |
T |
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| Q |
109 |
tagtacgtgtttacagaacttatcatcaaatgatgttccgacaggctcgttaggagtgtcaaaattaagaggataattacgacgagctagttaaatggct |
208 |
Q |
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| T |
30250802 |
tagtacgtgtttacagaacttatcatcaaatgatgttccgacaggctcgttaggagtgtcaaaattaagaggataattacgacgagctagttaaatggct |
30250703 |
T |
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| Q |
209 |
tttccaattggacacatacacaaaaaatttataccttgcatgaagcagctta |
260 |
Q |
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| T |
30250702 |
tttccaattggacacatacacaaaaaatttataccttgcatgaagcagctta |
30250651 |
T |
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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 34327043 - 34326994
Alignment:
| Q |
18 |
caaagccaaacattaacatcttggtctctctcttacaccaaagtgacata |
67 |
Q |
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| T |
34327043 |
caaagccaaacattgatatcttggtctctctcttacaacaaagtgacata |
34326994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 4029142 - 4029094
Alignment:
| Q |
18 |
caaagccaaacattaacatcttggtctctctcttacaccaaagtgacat |
66 |
Q |
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| T |
4029142 |
caaagccaaacattgatatcttggtctctctcttacatcaaagcgacat |
4029094 |
T |
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