View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1583_high_52 (Length: 256)
Name: NF1583_high_52
Description: NF1583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1583_high_52 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 158; Significance: 4e-84; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 80 - 237
Target Start/End: Original strand, 12866618 - 12866775
Alignment:
| Q |
80 |
tatcacactaaaataagattattgttgtattaatattgagtgtgtttgacagaaagttcccataagtttcgtgaaaaggcattggcaacgagtaacaaac |
179 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12866618 |
tatcacactaaaataagattattgttgtattaatattgagtgtgtttgacagaaagttcccataagtttcgtgaaaaggcattggcaacgagtaacaaac |
12866717 |
T |
|
| Q |
180 |
ccagttactctaaggcttccaaacacgaccgaaaagaaagttttttggaagaaaacta |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12866718 |
ccagttactctaaggcttccaaacacgaccgaaaagaaagttttttggaagaaaacta |
12866775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 138 - 237
Target Start/End: Complemental strand, 12966517 - 12966418
Alignment:
| Q |
138 |
cccataagtttcgtgaaaaggcattggcaacgagtaacaaacccagttactctaaggcttccaaacacgaccgaaaagaaagttttttggaagaaaacta |
237 |
Q |
| |
|
||||||||||| ||||||||| ||||| || || ||| ||||||||||||| ||||| ||||||||| | ||||||||||||| |||| ||||||||| |
|
|
| T |
12966517 |
cccataagttttgtgaaaaggtattggaaaggaataagaaacccagttactttaaggtttccaaacatggtggaaaagaaagtttcttgggagaaaacta |
12966418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 12866579 - 12866619
Alignment:
| Q |
11 |
agattattcttcaaacaaatcttcaagaaggaaaactggta |
51 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12866579 |
agattattcttcaaacaaatcttcaagaaggaaaactggta |
12866619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 102 - 237
Target Start/End: Original strand, 49742506 - 49742643
Alignment:
| Q |
102 |
tgttgtattaatattgagtgt--gtttgacagaaagttcccataagtttcgtgaaaaggcattggcaacgagtaacaaacccagttactctaaggcttcc |
199 |
Q |
| |
|
|||||| |||||||||| ||| || ||||||||||| ||| ||||||| |||| ||||||||||| | | ||||||| |||||||||||||| ||||| |
|
|
| T |
49742506 |
tgttgtgttaatattgattgtttgtatgacagaaagtgcccgtaagttttgtgagaaggcattggctaggtataacaaatccagttactctaagacttcc |
49742605 |
T |
|
| Q |
200 |
aaacacgaccgaaaagaaagttttttggaagaaaacta |
237 |
Q |
| |
|
||| | ||||||||| |||||||||||| ||||||||| |
|
|
| T |
49742606 |
aaatatgaccgaaaataaagttttttgggagaaaacta |
49742643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 201
Target Start/End: Original strand, 15133957 - 15134002
Alignment:
| Q |
156 |
aggcattggcaacgagtaacaaacccagttactctaaggcttccaa |
201 |
Q |
| |
|
||||||||||| || ||||||||||||| |||||||||||||||| |
|
|
| T |
15133957 |
aggcattggcatggaataacaaacccagtcactctaaggcttccaa |
15134002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University