View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1583_high_54 (Length: 251)
Name: NF1583_high_54
Description: NF1583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1583_high_54 |
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Alignment Details
Target: chr5 (Bit Score: 102; Significance: 9e-51; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 66 - 240
Target Start/End: Original strand, 4180649 - 4180822
Alignment:
| Q |
66 |
ggtcatatttataagaacagtaatgtggagggtccactcctnnnnnnn-tgtggagggtcccagggtccaataattagaattgtaatcataaattattta |
164 |
Q |
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| T |
4180649 |
ggtcatatttgtaagaacagtaatgtggagggtccactcctcaaaaaaatgtggagggtcc-agggtccaataattagaattgtaatcataaattattta |
4180747 |
T |
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| Q |
165 |
cgaattctagaattaaatttcaatannnnnnnnagttcatatacctattttttatttgggtaatgatttgattcat |
240 |
Q |
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| T |
4180748 |
cgaattctagaattaaatttcaata-tttttttagttcatatacctattttttatttgggtaatgatttgactcat |
4180822 |
T |
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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 4180560 - 4180592
Alignment:
| Q |
1 |
ttgatacacatgatatttgtaagtgtaataata |
33 |
Q |
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| T |
4180560 |
ttgatacacatgatatttgtaagtgtaataata |
4180592 |
T |
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