View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1583_low_10 (Length: 419)
Name: NF1583_low_10
Description: NF1583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1583_low_10 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: scaffold0024 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 8 - 416
Target Start/End: Original strand, 11116 - 11524
Alignment:
| Q |
8 |
ttacttcgttggattgttatgttcctttgcaacttaagtagtgtttgattttgcagaattccaccaagaaaatgattggtacagctgagagtcatggaga |
107 |
Q |
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| T |
11116 |
ttacttctttggattgtcatgttacctttcaacttaataagtgtttgattttgcagaattccaccaagaaaatgattggtacagctgagagacatggaga |
11215 |
T |
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| Q |
108 |
tttggatgctatacaagcccatgcctcagtttctttactttctcccaggcttgcttgtaattctgtttctaataacatggattctgcctcattatggcat |
207 |
Q |
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| T |
11216 |
tttgtatgctatacaagcccatgcctcagtttctttactttctcccatgctttcttgtaattctgtttctaataacatggattctgcctctttatggcat |
11315 |
T |
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| Q |
208 |
tgtagattaggtcatatctctgacgctattcacaaatgtattgcttcaacttatccttttatgtcttacaagaatggtaataaaaatactccttgtgatg |
307 |
Q |
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| T |
11316 |
tgtagattaggtcatatctctgacgctattcacaaatgtattgcttcaacttatccttttatttcttacaagaatcataataaaaatactccttgtgatg |
11415 |
T |
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| Q |
308 |
tttgtcatttttccaaacaaagagttcttcgttatcctaatagtgttactcattctaatagcatttttgatttgttacatgctgagatatcgggccccta |
407 |
Q |
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| T |
11416 |
tttgtcatttttccaaacaaagagttcttccttatcctaatagtgttactcattctaataacatttttgatttgttacatgctgatatatggggccctta |
11515 |
T |
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| Q |
408 |
tgctactcc |
416 |
Q |
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| T |
11516 |
tgctactcc |
11524 |
T |
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Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 211 - 253
Target Start/End: Complemental strand, 22454768 - 22454726
Alignment:
| Q |
211 |
agattaggtcatatctctgacgctattcacaaatgtattgctt |
253 |
Q |
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| T |
22454768 |
agattaggtcatatctctgacgctattcacaaatgtattgctt |
22454726 |
T |
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