View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1583_low_11 (Length: 412)
Name: NF1583_low_11
Description: NF1583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1583_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 338; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 15 - 389
Target Start/End: Original strand, 2912456 - 2912830
Alignment:
| Q |
15 |
gacaaggtaaaacgtgctgaagagtctcttaggactgtcatgtacttgagctgctggggtccaaattgatataagaaatccatgcatgcatgtttgaaat |
114 |
Q |
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| T |
2912456 |
gacaaggtaaaacgtgctgaagagtctcttaggactgtcatgtacttgagctgctggggtccaaattgatataagaaatccatgcatgcatgtttgaaat |
2912555 |
T |
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| Q |
115 |
tctattttgtagcttcggaatctatgtaaaagctttgtaaatctatctatctatatctatgtataaacctttacaattattgcatcaatgattataagtg |
214 |
Q |
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| T |
2912556 |
tctattttgtagcttcggaatctatgtaaaagctttgtaaatctatctatctatatctatgtataaacctttacaattattgcatcaatgattataagtg |
2912655 |
T |
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| Q |
215 |
tctggaccgagttagttttatgattatgaatttataacgtttctttagctaatttgtaacaaaggtagtgaatattttcttcgatttgacaaagtaaaag |
314 |
Q |
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| T |
2912656 |
tctggaccgagttagttttatgattatgaatttataatgtttctttagctaatttgtaacaaaggtagtcaatattttcttcgatttgacaaagtaaaag |
2912755 |
T |
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| Q |
315 |
aacctgtaaaaccaatttttaagaagtattagagatnnnnnnnccgaaactaacacgagtagtttctgggtagtt |
389 |
Q |
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| T |
2912756 |
aacctgtaaaaccaatttttaaaaagtattagaggtaaaaaaaccgaaactaacacgagtagtttctgggtagtt |
2912830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 38025146 - 38025194
Alignment:
| Q |
36 |
gagtctcttaggactgtcatgtacttgagctgctggggtccaaattgat |
84 |
Q |
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| T |
38025146 |
gagtctctaaggactgtcatgtacttgagctgctggggtcctaattgat |
38025194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 38031886 - 38031934
Alignment:
| Q |
36 |
gagtctcttaggactgtcatgtacttgagctgctggggtccaaattgat |
84 |
Q |
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|||||| | |||||||||||||||||||||||||||||||| ||||||| |
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| T |
38031886 |
gagtctttgaggactgtcatgtacttgagctgctggggtcctaattgat |
38031934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 286
Target Start/End: Original strand, 2915055 - 2915113
Alignment:
| Q |
228 |
agttttatgattatgaatttataacgtttctttagctaatttgtaacaaaggtagtgaa |
286 |
Q |
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| T |
2915055 |
agttttatgattatgaatttttaatgtttcttcaggtaatttgtaccaaaggtaatgaa |
2915113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 38003635 - 38003683
Alignment:
| Q |
36 |
gagtctcttaggactgtcatgtacttgagctgctggggtccaaattgat |
84 |
Q |
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| T |
38003635 |
gagtctttgaggactgtcatgtacttgagctgttggggtcccaattgat |
38003683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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