View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1583_low_13 (Length: 411)
Name: NF1583_low_13
Description: NF1583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1583_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 394
Target Start/End: Original strand, 48925898 - 48926295
Alignment:
| Q |
1 |
gaagtaagccctaggagaggggttatctctagtgactttctgaccatattttctccactgatatccatccttcacatacttcaatacccaaaaa-caaat |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
48925898 |
gaagtaagccctaggagaggggttatctctagtgactttctgaccatattttctccactgatatccatccttcacatacttcaatacccaaaaaacaaat |
48925997 |
T |
|
| Q |
100 |
tcaacatctcagttagtatatactagccaaaaactattatctttattatat---tccaaaaattatattaaaacaacaaatctgtatgattaaatttgaa |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48925998 |
tcaacatctcagttagtatatactagccaaaaactattatctttattatatagttccaaaaattatattaaaacaacaaatctgtatgattaaatttgaa |
48926097 |
T |
|
| Q |
197 |
attgtagaacttactaagccggtattggatgcatctgtttgcacaagaaccttggaaacttttggcgagattatgttgttgtgtttgaatgtctcctcct |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48926098 |
attgtagaacttactaagccggtattggatgcatctgtttgcacaagaaccttggaaacttttggcgagattatgttgttgtgtttgaatgtctcctcct |
48926197 |
T |
|
| Q |
297 |
cagtagtaatggtgctactctcagcaatggcatagccaaaccgattgaaacaattttcaacgttctcggcctttctcttccgcgatattggtgatact |
394 |
Q |
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| T |
48926198 |
cagtagtaatggtgctgctctcagcaatggcatagccaaaccgattgaaacaattttcaacgctctcggcctttctcttccgcgatattggtgatact |
48926295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 3259014 - 3259090
Alignment:
| Q |
5 |
taagccctaggagaggggttatctctagtgactttctgaccatattttctccactgatatccatccttcacatactt |
81 |
Q |
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||||| ||||||||||||||||||||||| || |||||||||||||| ||||| |||||||||||| |||||||||| |
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| T |
3259014 |
taagctctaggagaggggttatctctagtaaccttctgaccatatttcctccattgatatccatccatcacatactt |
3259090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 928376 - 928320
Alignment:
| Q |
20 |
gggttatctctagtgactttctgaccatattttctccactgatatccatccttcaca |
76 |
Q |
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||||||||||| || ||||| || |||||||| ||||| || ||||||||||||||| |
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| T |
928376 |
gggttatctctggtcactttttgtccatatttcctccaatggtatccatccttcaca |
928320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 76
Target Start/End: Complemental strand, 45307664 - 45307632
Alignment:
| Q |
44 |
ccatattttctccactgatatccatccttcaca |
76 |
Q |
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|||||||||||||||||||||||||| |||||| |
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| T |
45307664 |
ccatattttctccactgatatccatctttcaca |
45307632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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